Search Results for "particle tracking"
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Showing 22 open source projects for "particle tracking"
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OpenFOAM
The Open Source CFD Toolbox
OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide -
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OpenPTV
OpenPTV
OpenPTV is an abbreviation of the open source particle tracking velocimetry. This is an open source framework, developed jointly by academic institutions, that deals primarily with the three-dimensional particle tracking experiments in complex and turbulent flows. More about 3D-PTV on Wikipedia and links from our website: http://www.openptv.net -
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PyZgoubi is an interface to the Zgoubi particle tracking code written in python. It aims to ease the use of Zgoubi by providing a simple interface to create beam line elements and particles, and to automate running and analysing of simulations.
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TracTrac
Massive Object Tracking Software (Matlab/Python)
TracTrac is a Particle Tracking Velocimetry (PTV) software which is extremely fast (more than 10k points tracked per second, 100k under python) and accurate (up to 0.01 pixel resolution), forming thus a good concurrent to the state-of-the art PIV/PTV algorithms. It allows to track anything that moves: birds, ants, grains, water flows... It runs on Python (v2&3) or Matlab (>2012a with Image Processing toolbox). Give it a try ! Get the last sources on GitHub: https://github.com/jorishey1234... -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
... fix & Blob detection functions. Please visit our homepage for more information: http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ *Please cite our work using the following information: Zhang, H., T. Stangner, K. Wiklund, A. Rodriguez, and M. Andersson. 2017. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data. Comput. Phys. Commun. 219: 390–399. -
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vbSPT
variational Bayes single particle tracking
vbSPT is an acronym for variational Bayes single particle tracking, a software package for hidden Markov Model analysis of single particle tracking data, primarily for biophysical applications. Journal reference: Extracting intracellular diffusive states and transition rates from single-molecule tracking data. Fredrik Persson, Martin Lindén, Cecilia Unoson & Johan Elf. Nature Methods (2013). doi:10.1038/nmeth.2367 http://www.nature.com/nmeth/journal/vaop/ncurrent/abs/nmeth.2367.html -
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Puff is an atmospheric dispersion model using a lagrangian particle-tracking method, used primarily for simulating volcanic ash cloud trajectories.
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SMeagol
Simulated single molecule microscopy.
SMeagol is a software suite for simulation of live cell single molecule microscopy, mainly aimed at single particle tracking applications. The code uses a combination of Matlab and compiled C++ executables, and runs on linux, windows and mac. Installation instructions, system requirements, and many more details can be found in the manual. If you use SMeagol for in your research, please cite Lindén, M., V. Ćurić, A. Boucharin, D. Fange, and J. Elf. Simulated single molecule microscopy... -
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NOS Particle Tracking
We are developing a C++ particle tracker for the chesapeake bay based
The CBOLT project has been moribund for a number of years now. But we may re-birth it. For inspiration see the document (ACMGIS_2009_Vance.pdf) Integrating particle tracking models into a GIS for analysis and display of environmental phenomena, Tiffany Vance, Sharon Mesick, Scott Cross (2009). The software uses 4th order Runge Kutta, with a clever interpolation scheme based on irregular triangular mesh which can be adapted to any hydrodynamic model gridding method, from finite elements... -
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MDA
Molecular Dynamics Analyzer (MDA)
MDA is a 3D single-particle tracking software that explicitly addresses fluorescence microscopy experiments deep in living specimens. It is capable of minimizing the systematic error that occurs with astigmatism-based 3D techniques owing to the aberrations induced by the refractive index mismatch. In contrast to existing techniques, the method determines the aberration directly from the acquired 2D image stream by exploiting the inherent particle movement and the redundancy introduced... -
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A toolkit in C++ and python to process both experimental and simulation data of colloidal particles. Includes among others * a multiscale particle tracking algorithm [1] whose C++ implementation is optimised for 3D confocal data. Python implementation is more versatile (2D and 3D data). * a Leica file reader, * Steindhard bond orientational order calculation * a VTK file writer 1. Leocmach, M. & Tanaka, H. A novel particle tracking method with individual particle size measurement...
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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LiquidFun
2D physics engine for games
LiquidFun is a 2D rigid-body and fluid simulation C++ library for games based upon Box2D. It provides support for procedural animation of physical bodies to make objects move and interact in realistic ways. You can write LiquidFun code in C++, Java, or JavaScript. LiquidFun is an extension of Box2D. It adds a particle based fluid and soft body simulation to the rigid body functionality of Box2D. LiquidFun can be built for many different systems, including Android, iOS, Windows, OS X, Linux... -
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ParisSimulator
PArallel Robust Interface Simulator combines VOF and Front-Tracking
Paris, or ParisSimulator, is a PArallel Robust Interface Simulator. It combines VOF and Front-Tracking to create simulations of interfacial fluid flow, such as droplet bubbles or waves. It computes complex flows such as fast atomizing jets and has a Lagrangian particle option. -
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vbTPM
Variational Bayes for tethered particle motion
vbTPM is an analysis package aimed at analyzing time series from a single molecule technique called tethered particle motion, which are common for in vitro investigations of protein-nucleic acid interactions. vbTPM uses a variational approach to hidden Markov models, and resembles recent methods for single molecule FRET (http://vbfret.sourcefore.net/) and single particle tracking (http://vbspt.sourceforge.net/) data. 2014-08-12: NAR manuscript in print! http://dx.doi.org/10.1093/nar... -
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TrackArt
GUI for diffusion simulation and SMT data analysis
TrackArt is a simple MATLAB GUI for single particle tracking data analysis and simulation. -
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NanoTrackJ
NanoTrackJ - Size characterization of freely diffusing nanoparticles
NanoTrackJ moved to GitHub! Please see: https://github.com/thorstenwagner/ij-nanotrackj or http://fiji.sc/NanoTrackJ -
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CUSPKalman
Particle tracking in inhomogeneous B field based on Kalman filter
Particle tracking in inhomogeneous B field based on Kalman filter -
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mSim_npsat
Groundwater flow and transport simulation Matlab Toolbox
The code has moved to https://bitbucket.org/giorgk/msim. The version here is outdated. mSim toolbox is a suite of Matlab functions which are primarily used to simulate Non Point Source Pollution in Groundwater aquifers based on Finite element methods. The current version of mSim solves the following equations in steady state: 1) Groundwater flow equation. 2) Particle Tracking. 3) 1D Advection dispersion equation. In addition mSim provides a number of functions which assist... -
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Merlin++ is a multi-threaded particle beam tracking code for modelling particle accelerators. Now maintained on GitHub https://github.com/MERLIN-Collaboration/MERLIN
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An open source Java based library for target tracking algorithms as well as evaluation tools. Currently contains 11 different sequential filters, such as; Kalman, particle, H infinity, interacting multiple model (IMM), and others.
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The PARTICLE TRACKING VELOCIMETRY software detects particles in images, determines 2D particle positions, establishes particle correspondences among synchronized images, determines 3D particle positions, and tracks 3D positions through consecutive images.
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