Jeffrey Barrick

Will you be able to put out a new release? The Bioconda install is still broken on MacOSX and this prevents some people from using pipelines my lab develops.

Thanks for merging in these changes. Do you think you will create a new release with the fix incorporated? (I need that to update the Bioconda installs.) Let me know if I can help with that.

Fixed clang compile and bad_alloc error; works on MacOSX

Fixed clang compile and bad_alloc error; works on MacOSX

-a option reports different read matches for two identical repeats in reference