Search Results for "itk-snap medical image segmentation tool mac" - Page 2
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Showing 62 open source projects for "itk-snap medical image segmentation tool mac"
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MMMISA : a free, user-friendly tool for single/dual-modality DICOM file analysis MMMISA will be included as part of version 2 of DeepImageTranslator (https://sourceforge.net/projects/deepimagetranslator/) Citation: Ye RZ et al. DeepImageTranslator V2: analysis of multimodal medical images using semantic segmentation maps generated through deep learning.biorxiv.
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aPhoto
aPhoto is a Batch Intuitive Program Makes Text and Image Watermarks
Introduction: aPhoto is a batch, intuitive and portable program that helps you to make text(eg. Copyright Notice) and image(eg. Logo) watermarks for the photos, and save the result photos to JPG, PNG, GIF, or BMP file formats. aPhoto is a lightweight application whose purpose is to help users embed text or image watermarks on their favorite pictures. This is a portable program, so it is important to mention that it doesn't leave any traces in the Windows Registry. You can copy it on... -
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Semantic Segmentation Editor
Web labeling tool for bitmap images and point clouds
A web-based labeling tool for creating AI training data sets (2D and 3D). The tool has been developed in the context of autonomous driving research. It supports images (.jpg or .png) and point clouds (.pcd). It is a Meteor app developed with React, Paper.js, and three.js. -
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DICOV
MATLAB-based Dicom converter and viewer
DICOV (Dicom COnVerter) is a MATLAB-based tool for converting Dicom files into Analyze format with SPM orientation. Also, it supports simple Dicom viewer. As it utilizes some functions in SPM8, SPM8 should be installed and its path should be included to MATLAB path. A 64bit environment with more than 8GB RAM is required for DICOV (MAC OSX is recommended.). Dicom is unified medical image format, but there're some variability across the imaging systems. ... -
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amilab is a tool for image processing that includes its own scripting language, and an interface for visualizing 2d/3d images and 3d surfaces. Its main application is medical image processing.
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Frontend Regression Validator (FRED)
Visual regression tool used to compare baseline and updated instances
Visual regression tool used to compare baseline and updated instances of a website in a deployment pipeline. FRED is an opensource visual regression tool used to compare two instances of a website. FRED is responsible for automatic visual regression testing, with the purpose of ensuring that functionality is not broken by comparing a current(baseline) and an updated version of a website. The visual analysis computes the Normalized Mean Squared error and the Structural Similarity Index on the... -
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COCO Annotator
Web-based image segmentation tool for object detection & localization
COCO Annotator is a web-based image annotation tool designed for versatility and efficiently label images to create training data for image localization and object detection. It provides many distinct features including the ability to label an image segment (or part of a segment), track object instances, label objects with disconnected visible parts, and efficiently store and export annotations in the well-known COCO format. The annotation process is delivered through an intuitive and... -
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NiftyNet
An open-source convolutional neural networks platform for research
An open-source convolutional neural networks platform for medical image analysis and image-guided therapy. NiftyNet is a TensorFlow-based open-source convolutional neural networks (CNNs) platform for research in medical image analysis and image-guided therapy. NiftyNet’s modular structure is designed for sharing networks and pre-trained models. Using this modular structure you can get started with established pre-trained networks using built-in tools. Adapt existing networks to your imaging... -
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. A fast binary level-set based algorithm is implemented... -
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Deep Learning for Medical Applications
Deep Learning Papers on Medical Image Analysis
Deep-Learning-for-Medical-Applications is a repository that compiles deep learning methods, code implementations, and examples applied to medical imaging and healthcare data. The project addresses domain-specific challenges like segmentation, classification, detection, and multimodal data (e.g. MRI, CT, X-ray) using state-of-the-art architectures (e.g. U-Net, ResNet, GAN variants) tailored to medical constraints (small datasets, annotation costs, class imbalance). It includes Jupyter... -
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DIGITS
Deep Learning GPU training system
The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. DIGITS can be used to rapidly train the highly accurate deep neural network (DNNs) for image classification, segmentation and object detection tasks. DIGITS simplifies common deep learning tasks such as managing data, designing and training neural networks on multi-GPU systems, monitoring performance in real-time with advanced visualizations, and selecting... -
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Devanagari OCR
Devanagari Optical Character Recognition, Annotation tool
The project has source code and data related to the following tools: 1. Optical Character Recognition. Recognize machine printed Devanagari with or without a dictionary. 2. Document Image Analysis. Automatic page segmentation of document images in multiple Indian languages. Identifies pictures, lines, and words in a document scanned at 300 dpi. 3. Multi-lingual annotation. An interface that has transilteration and a soft-keyboard using which multiple languages can be input.... -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used to...
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn). -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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SegmentIt
Interactive Image Segmentation Tool
SegmentIt is an interactive image segmentation tool that allows to switch back and forth between the watershed approaches (watershed from markers and hierarchical watershed) so the user can explore the strengths of both. -
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Orfeo ToolBox
OTB is an open-source C++ library for remote sensing images processing
The Orfeo Toolbox is a C++ library for high resolution remote sensing image processing. It is developped by CNES in the frame of the ORFEO program. More information is available at www.orfeo-toolbox.org It is based on the medical image processing library ITK and offers particular functionalities for remote sensing image processing in general and for high spatial resolution images in particular. Targeted algorithms for high resolution optical images (SPOT, Quickbird, Worldview, Landsat,... -
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ITK-SNAP x64
ITK-SNAP static builds for Windows 64-bit(only one file)
ITK-SNAP is a software application used to segment structures in 3D medical images. It is the product of a decade-long collaboration between Paul Yushkevich, Ph.D., of the Penn Image Computing and Science Laboratory (PICSL) at the University of Pennsylvania, and Guido Gerig, Ph.D., of the Scientific Computing and Imaging Institute (SCI) at the University of Utah, whose vision was to create a tool that would be dedicated to a specific function, segmentation, and would be easy to use and learn. ... -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker... -
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Ezys
Ezys 3D medical image registration program
Ezys is a non-linear 3D medical image registration program. Ezys fully exploits the parallel computing power of inexpensive commercial graphics processing units (GPU), resulting in a very fast and accurate program capable of running on desktop PCs and even some laptops. On these systems, non-linear image registrations take less than a minute to complete. Ezys implements a diffeomorphic inverse consistent image registration algorithm with a demons-style regularization based on a... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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ivantk
Image-based Vascular Analysis Toolkit
The Image-based Vascular Analysis Toolkit is a set of multiplatform C++ libraries for vascular analysis of (3D) medical images, typically CT or MRI. It can be considered as an extension of the Insight Toolkit (ITK) for vascular image analysis, with methods for detection, extraction and modeling of vascular structures. -
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MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward. Please check VPL (Voxel Processing Library) project available on Bitbucket (https://bitbucket.org/3dimlab/vpl).
