Search Results for "itk-snap medical image segmentation tool mac"
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Showing 68 open source projects for "itk-snap medical image segmentation tool mac"
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ITK-SNAP is a tool for segmenting anatomical structures in medical images. It provides an automatic active contour segmentation pipeline, along with supporting manual segmentation toolbox. ITK-SNAP has a full-featured UI aimed at clinical researchers.
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PICSL Greedy Registration Tool
Fast deformable 3D image registration tool
Greedy is a tool for fast medical image registration. It was developed at the Penn Image Computing and Science Lab at the University of Pennsylvania. The motivation for developing greedy was to have a really fast CPU-based deformable image registration tool that could be used in applications where many images have to be registered in parallel - like multi-atlas image segmentation. -
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Insight Toolkit (ITK). ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions. New location: https://github.com/InsightSoftwareConsortium/ITK
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. Wrapping of the C++ code is accomplished through SWIG, in principle, any language wrapped by SWIG should be... -
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labelme Image Polygonal Annotation
Image polygonal annotation with Python
Labelme is a graphical image annotation tool. It is written in Python and uses Qt for its graphical interface. Image annotation for polygon, rectangle, circle, line and point. Image flag annotation for classification and cleaning. Video annotation. (video annotation). GUI customization (predefined labels / flags, auto-saving, label validation, etc). Exporting VOC-format dataset for semantic/instance segmentation. (semantic segmentation, instance segmentation). Exporting COCO-format dataset... -
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C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.
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Albumentations
Fast image augmentation library and an easy-to-use wrapper
Albumentations is a computer vision tool that boosts the performance of deep convolutional neural networks. Albumentations is a Python library for fast and flexible image augmentations. Albumentations efficiently implements a rich variety of image transform operations that are optimized for performance, and does so while providing a concise, yet powerful image augmentation interface for different computer vision tasks, including object classification, segmentation, and detection. ... -
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CleanVision
Automatically find issues in image datasets
CleanVision automatically detects potential issues in image datasets like images that are: blurry, under/over-exposed, (near) duplicates, etc. This data-centric AI package is a quick first step for any computer vision project to find problems in the dataset, which you want to address before applying machine learning. CleanVision is super simple -- run the same couple lines of Python code to audit any image dataset! The quality of machine learning models hinges on the quality of the data used... -
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IOPaint
Image inpainting tool powered by SOTA AI Model
IOPaint is a powerful open-source image editing tool focused on inpainting, outpainting, object removal, and general image manipulation driven by state-of-the-art AI models, delivering these capabilities through both local and hosted workflows. Designed to be fully self-hosted and flexible, IOPaint supports a variety of underlying generators and inpaint models — from LaMa erase networks to Stable Diffusion-based replace/object generation — giving users multiple ways to refine or reconstruct... -
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Label Studio
Label Studio is a multi-type data labeling and annotation tool
The most flexible data annotation tool. Quickly installable. Build custom UIs or use pre-built labeling templates. Detect objects on image, bboxes, polygons, circular, and keypoints supported. Partition image into multiple segments. Use ML models to pre-label and optimize the process. Label Studio is an open-source data labeling tool. It lets you label data types like audio, text, images, videos, and time series with a simple and straightforward UI and export to various model formats. It can... -
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Pixelization
Stable-diffusion-webui-pixelization
This is a specialized extension for the popular Stable Diffusion Web UI (AUTOMATIC1111) that focuses on converting or “pixelizing” images into a pixel-art aesthetic. It's designed as a plugin you install into the Web UI so that in the “Extras” or “Pixelization” tab you can drag in an input image and produce a stylized, block-based version with control over cell size, color depth, and segmentation. The extension uses pre-trained models and optionally can co-operate with the Web UI’s other... -
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HivisionIDPhoto
HivisionIDPhotos: a lightweight and efficient AI ID photos tools
HivisionIDPhotos is an open-source AI project designed to automatically generate professional ID photographs from ordinary portrait images. The system uses computer vision and machine learning models to detect faces, segment the subject from the background, and produce standardized identification photos suitable for official documents. It is designed as a lightweight tool that can perform inference offline and run efficiently on CPUs without requiring powerful GPUs. The software analyzes... -
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The MITK Workbench is a free, open-source application for medical image visualization, segmentation, registration, and much more. Beyond the Workbench application, MITK is a comprehensive C++ framework for medical image computing. It provides a modular foundation for extending the MITK Workbench with custom plugins or developing your own medical imaging applications and research prototypes.
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with... -
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PyDenseCRF
Python wrapper to Philipp Krähenbühl's dense (fully connected) CRFs
PyDenseCRF is a Python library that provides a wrapper around the implementation of fully connected Conditional Random Fields (CRFs) developed by Philipp Krähenbühl and Vladlen Koltun. The project allows developers and researchers to integrate Dense CRF inference into Python-based machine learning pipelines, particularly for computer vision tasks such as image segmentation and labeling. Conditional Random Fields are probabilistic graphical models used to model contextual relationships... -
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MONAI
AI Toolkit for Healthcare Imaging
The MONAI framework is the open-source foundation being created by Project MONAI. MONAI is a freely available, community-supported, PyTorch-based framework for deep learning in healthcare imaging. It provides domain-optimized foundational capabilities for developing healthcare imaging training workflows in a native PyTorch paradigm. Project MONAI also includes MONAI Label, an intelligent open source image labeling and learning tool that helps researchers and clinicians collaborate, create... -
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Perfect Pixel
Refine and quantize messy AI pixel art into clean, perfect pixels
perfectPixel is a workflow tool for turning messy “pixel-style” images, especially those produced by generative models, into truly grid-aligned pixel art that reads cleanly at any scale. It tackles a common problem with AI pixel art: edges that look pixelated at first glance but are not actually aligned to a coherent pixel grid, which causes shimmer, blur, and uneven block sizes when you zoom in. The tool analyzes an image to infer the intended grid size, then refines and quantizes the... -
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ML.NET
Open source and cross-platform machine learning framework for .NET
With ML.NET, you can create custom ML models using C# or F# without having to leave the .NET ecosystem. ML.NET lets you re-use all the knowledge, skills, code, and libraries you already have as a .NET developer so that you can easily integrate machine learning into your web, mobile, desktop, games, and IoT apps. ML.NET offers Model Builder (a simple UI tool) and ML.NET CLI to make it super easy to build custom ML Models. These tools use Automated ML (AutoML), a cutting edge technology that... -
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X-AnyLabeling
Effortless data labeling with AI support from Segment Anything
X-AnyLabeling is an open-source data annotation platform designed to streamline the process of labeling datasets for computer vision and multimodal AI applications. The software integrates an AI-powered labeling engine that allows users to generate annotations automatically with the assistance of modern vision models such as Segment Anything and various object detection frameworks. It supports labeling tasks across images and videos and enables developers to prepare training datasets for... -
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Easy DataSet
A powerful tool for creating datasets for LLM fine-tuning
Easy DataSet is a comprehensive open-source tool designed to make creating high-quality datasets for large language model fine-tuning, retrieval-augmented generation (RAG), and evaluation as easy and automated as possible by providing intuitive interfaces and powerful parsing, segmentation, and labeling tools. It supports ingesting domain-specific documents in a wide range of formats — including PDF, Markdown, DOCX, EPUB, and plain text — and can intelligently segment, clean, and structure... -
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WingSegment
WingSegment: A tool for Analysis and Modeling of Insect Wings
WingSegment is a MATLAB app-designed tool employing a hybrid approach of computer vision and graph theory for precise insect wing image segmentation. WingSegment detects cells, junctions, Pterostigma, and venation patterns, measuring geometric features and generating Voronoi patterns. The tool utilizes region-growing, thinning, and Dijkstra's algorithms for boundary detection, junction identification, and vein path extraction. It provides histograms and box plots of geometric features,... -
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JWST MIRI and NIRCam imaging Pipeline
creates seamless mosaics from multiple exposures.
James Webb Space Telescope (JWST) MIRI and NIRCam imaging data. This tool handles background matching, cosmic ray rejection, and creates seamless mosaics from multiple exposures. Features Multi-instrument Support: Process both MIRI and NIRCam data Background Matching: Automatic background leveling across exposures Cosmic Ray Rejection: Advanced cosmic ray identification and removal Seamless Mosaicking: Create continuous field mosaics from dithered observations ... -
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tdsft
TDSFT (Two-Dimensional Segmentation Fusion Tool)
...Numerous algorithms have been developed over time, but to date, there is no validated method for this procedure. Therefore, research is still active in this area. Two-Dimensional Segmentation Fusion Tool (TDSFT) is an open-source tool developed in MATLAB and distributed as a standalone application for MAC, Linux, and Windows, which offers a simple and extensible interface where numerous algorithms are proposed to "mediate" (e.g., process and fuse) multiple segmentations. TDSFT is a tool made with ease of use as a fixed point, to support and help medical specialists during their work. ... -
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ControlNet
Let us control diffusion models
ControlNet is a neural network architecture designed to add conditional control to text-to-image diffusion models. Rather than training from scratch, ControlNet “locks” the weights of a pre-trained diffusion model and introduces a parallel trainable branch that learns additional conditions—like edges, depth maps, segmentation, human pose, scribbles, or other guidance signals. This allows the system to control where and how the model should focus during generation, enabling users to steer... -
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Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.
