Open Source Linux Test and Measurement Software

FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then direct you to where your data may have problems and allow you to take necessary steps to correct it before doing any further analysis. FastQC is not tied to any specific type of sequencing technique, so it can be used to look at libraries of various experiment types (Genomic Sequencing, ChIP-Seq, RNA-Seq, BS-Seq etc etc).

*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4

Refactored BLT Components (RBC), includes data vectors and graph widgets for developing line and bar graph applications in Tcl/Tk.

SME LibreAquarium is an Aquarium management system with a Simulation Model Engine (SME) that makes a prediction of the possible measurement values for the different pollutants that affect to these aquatics systems (NO3,PO4, Fe). The simulator consults the recorded analysis to calculate a prediction of the NO3, PO4, Fe, that the these aquatic system produce. It also uses a central (fish, plant and invertebrates) database to check if the actual parameters are Ok, depending on the species that live in the Aquarium. With all the records, the Simulation Model predicts the algae risk too (low,medium,high) and the algae type(green,cyanotic.) using the Redfield coefficient. Appart from that, the program tries to bring another modest contribution to Open Source Software and the World of Aquariums. SME LibreAquarium helps to daily maintenace of the aquarium with habitants control(fishes,plants, invertebrates), expenses, statistics, alarms, etc.

A Crossplatform OpenGl Gui for a Accelerometer (via USART/Atmega).

Ever had a bunch of ASCII data that you would like to have a quick look at in frequency domain, but don't want to fire up some bulky analysis software package just for that? Well, I have... So I wrote this tiny tool. It is based on fftw (www.fftw.org) and boost's program options (boost.org). cli-fft is really simple: All it does is to receive ASCII data from a file or standard in, FFT it and write out the result into a file or to standard out.

This tool retrieves CrossRef information on article type, authorship, print date, subject area, etc. for publications specified by DOI and/or PubMed IDs (max. 100). The tool also tallies the order of authorship for a specified author.

This project goal is to provide a way to get screenshot and channels data from digital storage oscilloscope.

A cooperative passive radar aimed to be used over commercial (and cheap) hardware.

The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.

Optex Analyzer is a software to analyze and compare algorithms to solve approximately optimization problems. It has a GUI that allows select a set of input files containing raw algorithm results. The analysis is shown with tables and charts.

A Signal Acquisition, Visualization & Analysis software application: * Signals, as in analog sensor data * Acquisition, as in data sampling/capturing/recording * Visualization, as in plotting raw/processed data * Analysis, as in live/post data processing Capabilities: The software has build in support for National Instruments Daq equipment (NI-DAQ) or it can load external source scripts (python), for customizable data sources. Supports data exporting/importing to multiple file formats (H5, CSV, Matlab, txt) Raw and analyzed data can be visualized and inspected in real-time or via playback. Most traditional signal processing methods are available, such as trending (Mean, Peak, Min/Max, RMS, Variance, Kurtosis, Skew, MAD) and frequency domain analysis (FFT, FRF, Order Spectrum). For machinery/rotor dynamics impact testing, tacho, order tracking, order spectra, waterfall plots, orbit plots and bode plots are supported.

SimRecommender is a modular perl framework to simulate and test attacks on recommender systems. It uses a plug-in architecture to integrate different attacks and recommender algorithms.The development was supported by NSF award IIS-0812042 (see README).

SkyTracer is a desktop software intended for data collection in radioastronomical observations, as well as data collection for other uses. It's interface aims to be rich and easy to use. Data collection can be achieved by one of these devices: PICADC (free Microchip PIC solution developed by me [will make publicly available soon]), MC Measurement Computing (MCC) board or any Sound Card with Line In or Mic input (used for spectral analysis).

Track utility meters to see how much electricity is generated by solar panels and create charts of the meter data.

Uechi APM Web is an APM (Application Performance Management) Open Source Server Performance Monitor written and developed in Java and C # for all Linux and Windows platforms. The Uechi.APM.Web offers a complete resource for unlimited monitoring servers in real time. Have full control of the CPU consumption, memory, disk and network traffic. Communication is done via TCP Protocol Socket connection. More information, please visit: http://uechi.com.br/uechi-apm-web-eng/

Create colorful WiFi signal strength maps from NetStumbler GPS and signal data. Compatible with Google Earth. As far as we know, this is the only dedicated wifi mapper / map generation software currently available under GPL.

IMPORTANT: The flosslogic project has merged with the sigrok project. Development continues in the sigrok wiki, mailing lists, IRC channel, and git repository.

The JTimeSeries has moved to github Please go to https://github.com/JTimeSeries/jtimeseries The SourceForge copy has not been maintained since Sep 2012 A java library to assist with capturing and storing timeseries data/metrics. Provides facilities to publish timeseries data across a network, a lightweight server to persist series data, and client user interface components for real time visualization

A tool for graphical analysis of digital traces recorded by Agilent's Logic Analyzers like HP16700. It is possible to perform higher level bus protocol decoding and parsing with help of "search" tab. These tabs are used to select the Bus Decoder (plugin shared library), configure Bus Decoder parameters and execute higher level analysis. The tool tries to be self descriptive and get as many information as possible from HP16700 for better documenting labor: e.g. test cases, spotted issues and so on. Keywords: Linux, C, C++, Qt, Qt4, Agilent/HP 16700 logic analyzer, Bus decoders (inverse assemblers), bus probing, bus protocol analyze