Search Results for "spectral analysis"
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Showing 48 open source projects for "spectral analysis"
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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relax
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data. -
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rx2fits
HF/VHF spectrosopy code for the rx888mk2 direct-sampling receiver
rx2fits is an SDR code for the rx888mk2 direct-sampling receiver that streams spectral data with frequency up to 65 MHz to FITS files. This code is for the direct-sampling input of the receiver, which transmits real samples over USB3 at up to 130 MHz sample rate. rx2fits processes these samples to spectral intensities via a Fourier-transform poly-phase filter bank, which provides spectral resolution approaching the spectral bin width with good stop-band and adjacent-channel rejection. ... -
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Eleana
Program for the analysis of spectroscopic data, in particular EPR(ESR)
...It allows you to import data from Bruker spectrometers such as Elexsys or EMX and data from any ASCII file or imported from the clipboard. The program is under constant development, but already has many functions implemented for spectral analysis. Some of the basic functions include: baseline corrections, filtering, spectral clipping, integration / differentiation, pseudomodulation, filtering, etc. More advanced functions are: Forward / Inverse Fourier Transforms, Hilbert Transforms, Nonlinear Curve Fit, Global Analysis Fit of Multiple Curves, and many other. It is also possible to create your own plugins extending Eleana's functionality. -
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echoes
Echoes is a radio spectral analysis software for SDR devices
Echoes it's a radio spectral analysis software for SDR devices, designed for meteor scattering purposes. The older releases supported only RTL-SDR devices. They are very cheap SDR based on DVB-T TV tuner dongles based on Realtek's RTL2832U chipset. Starting from 0.50 Echoes embeds SoapySDR allowing the support of many other SDRs. Echoes doesn't demodulate neither decode any human-made signal. -
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lms2fits
Dual-channel spectroscopic receiver using LimeSDR-USB
`lms2fits` is a dual-channel spectroscopic receiver for radio astronomy that employs theLimeSDR's LimeSDR-USB dual-channel transceiver, which in turn employs Lime Microsystems' LMS7002M transceiver chip. These systems allow a frequency-agile (<30 MHz to 3.8 GHz) receiver providing Stokes parameters in dynamic spectra of up to 60 MHz analog bandwidth streamed to a FITS file with three-axis primary table. It runs on linux under .Net. -
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SASA Tool
SWATH-Auto System Analyzer Tool, SASA Tool
SWATH-Auto System Analyzer Tool, SASA Tool, is a novel SWATH platform for non-targeted metabolomics data analysis with an accurate mass spectral library for metabolite identification using SWATH acquisition mode. -
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Calibr is a tool for the spectrum-centric analysis of DIA data against DDA-based spectral library, to perform optimization of spectrum preprocessing and calculating various spectral similarity measures as features for validation. In addition to spectral similarity measures, Calibr provides other two types of features related to precursor ion and spectrum property and statistics from spectrum-spectrum matches (SSMs) for machine-learning based validation. ...
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Geophysical Library is a C++-library to handle geophysical data. At the moment the focus is on magnetotelluric and seismic data. It also includes a genetic algorithm for data inversion, signal processing and statistics routines.
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Radiance
Highly accurate ray-tracing software system for UNIX computers
Radiance is a free, highly accurate ray-tracing software system for UNIX computers. It is a suite of programs designed for the analysis and visualization of lighting in design. Radiance is superior to simpler lighting calculation and rendering tools in that there are no limitations on the geometry or the materials that may be simulated. Scene geometry, materials, luminaires, time, date and sky conditions (for daylight calculations) are specified; spectral radiance (ie. luminance + color), irradiance (illuminance + color) and glare indices are calculated. ... -
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BioNet-Finder
Network-based modeling and analysis for complex biological data
BioNet-Finder is a network-based genomic data modeling project, supported by the Multivariate Statistics lab of the Brain and Behavioural Science Department at University of Pavia (Pavia, Italy), to share data, methods, and code for network-based analysis of complex disorders. Our goal is to provide straightforward tools for data reduction, modeling, and interpretation, avoiding common issues, including data selection, database compositional biases, topological/hierarchical organization of data, genomic complexity, latent effects on the observed system, and output ranking. This is carried out applying network analysis methods from different fields, such as Structural Equation Modeling (SEM), together with data reduction algorithms (e.g., random walkers, spectral analysis, shortest path-based or topology-based algorithms). ... -
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QPROT is a software for differential protein expression using spectral count and intensity data. It also accounts for independent samples and paired samples. The input data should be rolled up to proteins before analysis. Extension to peptide level analysis is in progress.
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sdmixer
A tool for 2D/ 3D multi-color super resolution microscopy
The open source software sdmixer reconstructs a TIFF image from a single molecule localization data set. The spectral demixing option allows multi color super resolution microscopy. sdmixer supports multipage TIFF images and is able to process large 3D data sets. Further features are 2D/3D convolution, histogram based contrast enhancement and nearest neighbor analysis. -
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SpecAnaSyn
Spectral Analysis and Synthesis of Sounds
This project provides two binaries, mostly identical in features: a command line application (using libpopt for option parsing), and a graphical application (using libgtkmm (version 2) for the GUI and libao for sound playing). It uses spectral modelling techniques for parameterized sound analysis and synthesis. For the analysis phase an STFT is done (using libfftw for doing FFTs), and then harmonic/sinusoidal analysis. For the synthesis phase additive synthesis is used. Using libsndfile for sound loading and saving allows to support many uncompressed sound file formats (WAV, AIFF, AU, headerless RAW, ...), and also OGG and FLAC, but MP3 isn't supported. ... -
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mp3respectr
Weakening effect on the MP3 audio encoder
Weakening effect on the MP3 audio encoder and the assimilation of the spectral characteristics of the source. Produced by applying empirical filter (derived from an analysis of a pair of flac-mp3) to the sound in the space R2. 1) Transfer the sound of the space R to R2 (mp3rsrr2); 2) Finding the empirical filter by OLS pair flac-mp3 (mp3rsols); 3) Apply a filter to the sound (mp3rsvalue); 4) Transfer the sound of the space R2 in space R (mp3rsr2r); -
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Epsilon-Q
For multiple spectral library searching and quantitative analysis
Epsilon-Q offers mass spectrometry-based multiple spectral library searching and label-free quantitative analysis. Epsilon-Q contains two standalone tools: - simSPL Builder: Simulated spectral library builder - Combo-Spec Search: Multiple spectral library search tool -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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SoundRuler is a tool for acoustic analysis, graphing and teaching. It interactively recognizes and measures 35 temporal and spectral properties of each sound in a file. It also features several measurement, graphing and didactic modules.
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence.
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GPS Interactive Time Series Analysis
A software for processing and analyzing time series in Earth Science
Along with calculating basic statistics and quality parameters such as mean and variance, the soft-ware is capable of importing and visualizing different standard time series formats, determining and removing jumps and outliers, and makes numerical and publication quality graphical outputs. Bivariate statistical analysis (including correlation coefficient and linear regression) and time series analysis (including auto and cross-spectral analysis, wavelet power spectrum, spectrogram and periodicities) form the main analysis features of the software. -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
...These challenges are similar but not identical to the challenges arising in the analysis of metagenomic samples and require specific solutions. pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
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iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class. See the change log for full details.
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gspbox
The graph signal processing toolbox
The gspbox is the graph signal processing toolbox for matlab. This toolbox is based on spectral graph filtering techniques and work mainly for undirected graphs. Main features - Graph wavelet analysis / Synthesis - Filterbank analysis / Synthesis - Graph filter design - Graph reduction - Graph generation - Fast compuatation using Chebysheff polynomials
