Search Results for "taxonomy"
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Showing 76 open source projects for "taxonomy"
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Level Up Your Cyber Defense with External Threat ManagementMove beyond alerts. Gain full visibility, context, and control over your external attack surface to stay ahead of every threat.
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Simple, Secure Domain RegistrationRegister or renew your domain and pay only what we pay. No markups, hidden fees, or surprise add-ons. Choose from over 400 TLDs (.com, .ai, .dev). Every domain is integrated with Cloudflare's industry-leading DNS, CDN, and free SSL to make your site faster and more secure. Simple, secure, at-cost domain registration.
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Image Fusion
Deep Learning-based Image Fusion: A Survey
... of methods, code and performance comparisons in the domain of image fusion. Survey style description of method taxonomy, architectures, loss types. Compilation of many state-of-the-art image fusion methods (infrared + visible, multi-focus, multi-exposure). Survey style description of method taxonomy, architectures, loss types. -
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Java Design Patterns
Design patterns implemented in Java
A comprehensive, community-maintained collection of design pattern implementations in Java, offering well-documented, educational examples to help developers understand and apply common architectural solutions. All designs should be as simple as possible. You should start with KISS, YAGNI, and Do The Simplest Thing That Could Possibly Work principles. Complexity and patterns should only be introduced when they are needed for practical extensibility. The design patterns are now available as... -
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UCO3D
Uncommon Objects in 3D dataset
uCO3D is a large-scale 3D vision dataset and toolkit centered on turn-table videos of everyday objects drawn from the LVIS taxonomy. It provides about 170,000 full videos per object instance rather than still frames, along with per-video annotations including object masks, calibrated camera poses, and multiple flavors of point clouds. Each sequence also ships with a precomputed 3D Gaussian Splat reconstruction, enabling fast, differentiable rendering workflows and modern implicit/point-based... -
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CSS Inspiration
Curated collection of interesting, creative, or inspiring CSS effects
CSS-Inspiration is a living gallery of modern CSS effects and components that highlights what’s possible with pure CSS and minimal markup. The collection ranges from micro-interactions and loaders to 3D transforms, complex backgrounds, hover states, and text effects, each presented as a small, self-contained demo. Source code is front and center, encouraging developers to study, copy, and tweak snippets for their own projects. Many examples lean on contemporary features—custom properties,... -
Gen AI apps are built with MongoDB AtlasMongoDB Atlas is the developer-friendly database used to build, scale, and run gen AI and LLM-powered apps—without needing a separate vector database. Atlas offers built-in vector search, global availability across 115+ regions, and flexible document modeling. Start building AI apps faster, all in one place.
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Hugo PaperMod
A fast, clean, responsive Hugo theme
PaperMod is a fast, minimal-yet-featureful theme for the Hugo static site generator, aimed at blogs, documentation sites, and personal pages. It focuses on clean typography, responsive layouts, and sensible defaults, while exposing a large set of front-matter and config options. Built-in features include dark/light modes, archive and taxonomy views, reading-time indicators, breadcrumbs, and an optional profile/landing layout. Client-side search, code highlighting, social links, and comment... -
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Hugo Book Theme
Hugo documentation theme as simple as plain book
Hugo documentation theme as simple as a plain book. By default, the theme will render pages from the content/docs section as a menu in a tree structure. You can set title and weight in the front matter of pages to adjust the order and titles in the menu. There are a few configuration options that you can add to your config.toml file. A simple blog is supported in the section posts. A blog is not the primary use case of this theme, so it has only minimal features. The theme supports Hugo's... -
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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Taxallnomy is a taxonomic database that provides taxonomic lineages according to the ranks used on Linnean classification system (e.g. Kingdom, Phylum, Class etc.). Taxallnomy is based on the NCBI Taxonomy, thus you will find along the taxonomic lineage either taxa originally ranked in NCBI Taxonomy or some unique nodes created by the Taxallnomy algorithm, since some taxonomic ranks are missing in the original taxonomic lineage (for example, the Superclass rank is missing on the Homo sapiens...
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Quiz/Survey/Test - QST
A Free, complete, enterprise grade, open source exam management system
QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly... -
The All-in-One Commerce Platform for Businesses - ShopifyShopify is a leading all-in-one commerce platform that enables businesses to start, build, and grow their online and physical stores. It offers tools to create customized websites, manage inventory, process payments, and sell across multiple channels including online, in-person, wholesale, and global markets. The platform includes integrated marketing tools, analytics, and customer engagement features to help merchants reach and retain customers. Shopify supports thousands of third-party apps and offers developer-friendly APIs for custom solutions. With world-class checkout technology, Shopify powers over 150 million high-intent shoppers worldwide. Its reliable, scalable infrastructure ensures fast performance and seamless operations at any business size.
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... Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 Aug;73(16):5261-7. 2. Wang Q, Cole JR. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc. 2024 Apr 11;13(4):e0106323.
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com-hfg
java library for XML, HTML, or SVG generation + bioinformatics classes
The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8. -
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Woocommerce Product List Widget
Enhance Your WooCommerce Store with the Woo Product List Widget Plugin
Running a successful online store with WooCommerce requires careful attention to product presentation and user experience. One of the key elements in achieving this is displaying your products in an organized and visually appealing manner. This is where the GM Woo Product List Widget plugin comes into play. In this blog post, we'll explore the features and benefits of this powerful plugin that can help you take your WooCommerce store to the next... -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
... and specific settings can be used to proceed with the taxonomic labeling. TaxOnTree turns its user into an expert on taxonomy. TaxOnTree also corrects for the absence of some taxa in NCBI taxonomy. Command line program is easy to set up and can be coupled to several bioinformatics tools, producing a colored tree in PDF format. TaxOnTree is available as a web tool in http://biodados.icb.ufmg.br/taxontree for low demanding jobs. -
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The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction which is based on data of CAMI (Critical Assessment of Metagenome Interpretation) and contains labeled data from gene regions. The benchmark is made up of 9 datasets. For each one of them is provided: - List of names, taxonomy ID and taxonomic level of the genomes of the organisms that make up the dataset (genomes.csv) - Set of sequences extracted from the respective selected genomes (sequences.fasta...
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MaxBin
An automatic tool for binning metagenomics sequences
... or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.7. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. -
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MaxBin2
An automatic tool for binning metagenomics sequences
...-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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MetaAnnotator
Fast and Accurate Taxonomic Annotation for Metagenomic reads
Hi everyone. NCBI has adopted a new format for its ref sequences. MetaAnnotator currently can not work on latest version of NCBI ref seq. I will update the program soon. You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that. Taxonomic annotation is a critical first step for analysis of metagenomic data. Despite a lot of tools being developed, the performance (both running time and accuracy) is still not satisfactory, in... -
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OLiA
OWL/DL ontologies for linguistic annotations
MOVED TO https://github.com/acoli-repo/olia. The Ontologies of Linguistic Annotations (OLiA) provide an OWL/DL taxonomy of data categories as a reference for linguistic annotation (OLiA Reference Model), plus OWL/DL models for a large number of annotation schemes (OLiA Annotation Models) and their relationship to reference data categories (OLiA Linking Models). The OLiA Reference Model itself is linked to community-maintained repositories such as GOLD (http://linguistics-ontology.org... -
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... the use of services (...) 5. XBRL Similarity Tool implements a process to evaluate similarity between concepts of XBRL (...) 6. XBRL SPED Taxonomy is a data model, in order to create a standard, organized to support to Brazilian Public Digital Bookkeeping System (SPED)(...) 7. easyXBRL is a Python-based XBRL library (...) 8. J-easyXBRL is a Java-based XBRL library (...) 9. Xbrl Parser converts XBRL file from XML to JSON format; https://sourceforge.net/p/xbrlframework/wiki/Home
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Go Patterns
Curated list of Go design patterns, recipes and idioms
...). Organized taxonomy for Go idioms. -
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HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
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Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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MT-MT-Toolbox
Metagenomics version of MTToolbox
MT-Toolbox is a pipeline of tools used for analyzing molecule tagged MiSeq reads. The metagenomics version of MT-Toolbox is a plugin that includes operations for OTU building, OTU taxonomy assignments, and OTU contaminant filtering. These features are not included in the basic version because they only apply to microbial 16S profiling experiments. The standard version of MT-Toolbox can be applied to any amplicon sequencing project where molecule tags are incorporated. For more information... -
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Gleez CMS
A Light, Simple, Flexible Content Management System
... suitable for any business or organization. Built on the PHP programming language and the MySQL database, Gleez delivers superb performance on any size application. Gleez uses the MPTT system for classifying content, which is known as taxonomy and is implemented in the core. You can define your own vocabularies (groups of taxonomy terms), and add terms to each vocabulary. Users, Roles, and Permissions. Users on your site can be assigned permissions via roles.
