Search Results for "pedigree"
Sort By:
Showing 30 open source projects for "pedigree"
View related business solutions-
Try Google Cloud Risk-Free With $300 in CreditUse your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.
-
8 Monitoring Tools in One APM. Install in 5 Minutes.AppSignal works out of the box for Ruby, Elixir, Node.js, Python, and more. 30-day free trial, no credit card required.
-
1
-
2
Gramps
Gramps, the open source genealogy program
Gramps is a genealogy program for Linux, Windows, Mac, and FreeBSD that allows you to easily build and keep track of your family tree. It supports the GEDCOM standard, allows fine grained privacy controls and can generate many different types of reports (descendant trees, graphs, connection diagrams, ....) -
3
GEDKeeper
GEDKeeper - opensource and crossplatform genealogy management program
GEDKeeper program is developed for work with personal genealogical database. The program is designed for extremely simple and intuitive interface. The program is very easy to install on the computer, fully supports the GEDCOM format, has no restrictions on the number of persons and generations, allows you to generate pedigrees, building several tree species, as well as print and save their images, provides fast navigation, filtering, searching and adding multimedia materials. In addition... -
4
fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by fcGENE: plink-pedigree, plink-raw, plink-dosage, mach-inputs, minimac-inputs, impute-inputs, beagle-inputs and bimbam-inputs, HAPLOVIEW-inputs, EIGENSOFT-inputs. ... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
5
Inzuchtrechner
Simple tool to calculate the coefficient of inbreeding
Inzuchtrechner calculates the coefficient of inbreeding using the formula of Sewall-Wright. 4 or 5 generations can be entered in a pedigree. The pedigree can be saved as a file, reloaded, changed and so on. -
6
Trails
Modern Web Application Framework for Node.js.
Trails is a modern, community-driven web application framework for Node.js. It builds on the pedigree of Rails and Grails to accelerate development by adhering to a straightforward, convention-based, API-driven design philosophy. Trails uses Yeoman to generate scaffolding for new applications and to create resources inside the application. Trailpacks extend the framework's capabilities and allow developers to leverage existing ecosystem tools through a simple and well-defined API. ... -
7
Pathway-PDT
Pathway-PDT: A Flexible Pathway Analysis Tool for Nuclear Families
...Although many pathway analysis tools have been developed for case-control study, there is no tool that can use all information from raw genotypes in general nuclear families. We developed the Pathway-PDT, which uses the framework of Pedigree Disequilibrium Test (PDT) for general family data, to perform pathway analysis. Availability and implementation: Pathway-PDT is implemented in C++ with POSIX threads (pthreads). Binaries (Windows) and source codes with makefile (Linux) are available. Contact: rchung@nhri.org.tw Citation: Yo Son Park, Michael Schmidt, Eden R. ... -
8
denovo_hit
Outputs potential denovo variants from VCF given pedigree information.
.../denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, SAMPLE_ID, ... Format pedigree file (tab delimited): SAMPLE_ID_CHILD, SAMPLE_ID_PARENT1, SAMPLE_ID_PARENT2 Output file format (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, PEDIGREE, CALL_STATS, COUNTS ... -
9
jeneo
WISIWIG pedigree tree editor
A WISIWIG pedigree tree editor written on python. Jeneo allow you to create your pedigree tree visually, add pedigree links (child) and (i need that feature first off all - in fact that is why a i've written this app) add photos to your relatives. Jeneo home page has moved to bitbucket. Please visit jeneo wiki at https://bitbucket.org/legeyda/jeneo/wiki/jeneo.en. -
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
-
10
Madeline 2.0 Pedigree Drawing Engine
Madeline 2.0 Pedigree Drawing Engine (PDE)
The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. PLEASE NOTE THAT as of 2015.09.30, the most current Madeline source code tree is now maintained on GITHUB at https://github.com/piratical/Madeline_2.0_PDE . -
11
PRIMUS
Pedigree Reconstruction and Identification of a Maximum Unrelated Set
NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. -
12
Pigeon Planner
Organise and manage your pigeons
Pigeon Planner aims to be a simple to use pigeon database. Add, edit, remove pigeons and view their details such as name, image, sex, colour, pedigree, relatives and results in the user-friendly interface. -
13
mapgraph
Massively Parallel Graph processing on GPUs -- now part of Blazegraph
Mapgraph is SYSTAP’s disruptive new technology to exploit the main memory bandwidth advantages of GPUs. The early work was co-developed with the University of Utah SCI Institute and has its pedigree in the UINTAH software running on over 750M cores on the TITAN Super Computer. Today, SYSTAP has commercialized this technology into it’s Blazegraph Accelerator and Blazegraph HPC products. Checkout our options for GPU acceleration of graphs or contact us to learn more: https://www.blazegraph.com/product/gpu-accelerated/. ... -
14
FamSeq
Variant calling on the basis of pedigree information
It is still challenging to call rare variants. In family-based sequencing studies, information from all family members should be utilized to more accurately identify new germline mutations. FamSeq serves this purpose by providing the probability of an individual carrying a variant given his/her entire family’s raw measurements. FamSeq accommodates de novo mutations and can perform variant calling at chromosome X. To accommodate variations in data complexity, FamSeq consists of three... -
15
-
16
GERMLINE
Algorithm for discovering long shared segments of IBDs in populations.
GERMLINE is an algorithm for discovering long shared segments of Identity by Descent (IBD) between pairs of individuals in a large population. It takes as input genotype or haplotype marker data for individuals (as well as an optional known pedigree) and generates a list of all pairwise segmental sharing. -
17
r4st
A database rapid application development tool
The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage. -
18
PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
-
19
CNViewer
CNViewer shows CNV and LOH data in affected and unaffected individuals
CNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to allow the identification of regions where the values of either the CN state or the LOH scores are the same in all the affected individuals, but none of the unaffected individuals have the same value. As well as visualising the CN state and LOH data, the program will also display Log(2) ratio, smooth signal and allele difference values that may also be obtained from the Affymetrix SNP 6.0 array (details on how to export the data are here). ... -
20
-
21
The bulk of genealogy software is pedigree based. The Angkan project is a descendant-oriented family tree collection, maintenance and presentation system. Angkan is the Filipino/Tagalog word for Tribe.
-
22
Cattery Management is a pedigree, genetics and cattery management database for cat breeders. It is built in MS Access (Access 97 and above) by cat breeders and has a comprehensive list of features to track and manage all cattery activities.
-
23
HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.
-
24
Stammis Internet is a concept which purpose is to help eachother with pedigree online. However it can be used as a single-system for writing down your pedigree / pedigrees. Don't be shy... Give it a try!
-
25
Genobase is a database system for managing genotype, phenotype, sequence, pedigree and related information that is generated as part of linkage-based gene discovery projects. It includes a webpage-driven GUI implemented through object-orientated PHP.
