Search Results for "netcdf"
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Showing 53 open source projects for "netcdf"
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NetCDF.jl
NetCDF support for the julia programming language
NetCDF support for the Julia programming language, there is a high-level and a medium-level interface for writing and reading netcdf files. The dimensions "x1" and "t" of the variable are called "x1" and "t" in this example. If the dimensions do not exist yet in the file, they will be created. The dimension "x1" will be of length 10 and have the values 11..20, and the dimension "t" will have length 20 and the attribute "units" with the value "s". -
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NCDatasets.jl
Load and create NetCDF files in Julia
NCDatasets allows one to read and create netCDF files. NetCDF data set and attribute list behave like Julia dictionaries and variables like Julia arrays. This package implements the CommonDataModel.jl interface, which means that the datasets can be accessed in the same way as GRIB files opened with GRIBDatasets.jl. -
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NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
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Autoplot
Autoplot is an interactive browser for data on the web
Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting! -
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ClimateTools.jl
Climate science package for Julia
Climate analysis tools in Julia. ClimateTools.jl is a collection of commonly-used tools in Climate science. Basics of climate field analysis are covered, with some forays into exploratory techniques associated with climate scenario design. The package is aimed to ease the typical steps of analysis of climate models outputs and gridded datasets (support for weather stations is a work-in-progress). Climate indices and bias correction functions are coded to leverage the use of multiple threads.... -
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ensemble-verification-system
A software tool for verifying ensemble forecasts
The Ensemble Verification System (EVS) is designed to verify ensemble forecasts of hydrologic and hydrometeorological variables, such as temperature, precipitation, and streamflow, issued at discrete forecast locations (points or areas). -
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cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
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--- IMPORTANT : This project has been moved to GitHub at https://github.com/clstoulouse/motu-client-python. Download the last version from the release page https://github.com/clstoulouse/motu-client-python/releases. --- Motu is a high efficient and robust Web Server which fills the gap between heterogeneous Data Providers to End Users. Motu handles, extracts and transforms oceanographic huge volumes of data without performance collapse. This client enables to extract and...
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Inviwo
Interactive Visualization Workshop
Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and... -
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gaia-physics
Gravitational Accelerations Inverter and Analyzer
...GAIA inverts these accelerations using a mascon technique to determine the mass distribution that most closely matches the acceleration data. GAIA creates a timestamped output folder filled with data and a source code snapshot. Output data files are provided in plain text and NetCDF formats. Output map data are turned into PNG maps using a script which runs GMT and ImageMagick. This script can be modified and re-run, changing the projection or zooming in on a specific part of the world, which will automatically recalculate the "data range" blurb using only data inside the new zoomed region. Output time series data are analyzed by an R script which calculates statistical significance, but interpret those results with caution. ... -
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chemfiles
Modern library for chemistry file reading and writing
Chemfiles is a modern and high-quality library for reading and writing trajectory files created by computational chemistry simulations program. These trajectories contains atomic positions, velocities, names, topology and sometimes more. Running simulations produce enormous amounts of data, which has to be post-processed to extract physical information about the simulated system. Chemfiles provides an interface to access this information which is - unified: the same code will work with... -
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LibCF supports the creation of scientific data files conforming to the Climate and Forecast (CF) conventions, working closely with the netCDF library.
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nccmp
Compare two NetCDF files in-place.
We've moved to Gitlab! (gitlab.com/remikz/nccmp) Compares two NetCDF files in-place to find specific variables, dimensions and/or attributes that differ. Highly recommended for any test-driven environment and regression testing large datasets. -
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The Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
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Ionwinze
Spot the differences between samples, groups and classes
To download please go to Browse All Files for the complete pack! In mass spectrometry the detector responses are not always directly proportional to the quantity of compounds. Large peaks in LCMS traces are not equal to major components but their ionizability. The effectiveness of a medicinal plant, poisons in a mushroom, resistance and susceptibility to pest and diseases are not necessarily because of the compounds that give large peaks. These traits are determined by the different... -
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ncmock
NetCDF mock data generator.
Creates a NetCDF file from command-line arguments. Variables can be any type and filled with data in 5 ways, either a constant, a checker pattern, randoms, linear range, or a sombrero ripple function, all of which can be animated too if they use a record dimension. Global and variable attributes can also be created. Esoteric controls exist for choosing alignment, blocksize, file flavor (classic or HDF5), prefill, initial size, and header pad. ncmock has throughput and peak memory calipers, so it can also be used as a benchmark tool -
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ncregrid
Regrid 2D structured (warped) grid in NetCDF file to uniform grid.
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ncclamp is a command-line tool for NetCDF files that allows you to replace values in-place for a variable given the old value to be replaced, the new value, and a comparison operator. The change is applied across all of the variable's dimensions.
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...It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv and txt format. The software source code is freely available under the license of GPL2.
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Implementation of an OGC Web Map Service, primarily for serving images dynamically generated from NetCDF data files (although other file formats can also be handled). Also an AJAX web mapping interface based on OpenLayers.
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NetCDF Quick Reference
NetCDF Quick Reference
The NetCDF Quick Reference is a mixed documentation and programming project for a practical introduction to NetCDF with step-by-step examples. -
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NOS Particle Tracking
We are developing a C++ particle tracker for the chesapeake bay based
...The software uses 4th order Runge Kutta, with a clever interpolation scheme based on irregular triangular mesh which can be adapted to any hydrodynamic model gridding method, from finite elements to Arakawa C. Although some small work needs to be done to implement each grid method. It reads netcdf model output and can be pointed at OpenDAP servers for the data. -
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ncfill
Fill missing values in a NetCDF variable.
