Search Results for "imaris"

MatLab Analysis of Imaris Data (MAID) allows users to automatically analyse exported statistical information from Imaris (Bitplane) using a variety of modular MatLab designed scripts. The modular design allows users to change and add to the already existing scripts. Currently 3 main classes of functions can be determined, Statistical analysis, Plotting of data, and the concatenation of data.

Fortran and shell-level programs originally designed for the analysis of quasi-helical trajectories of Toxoplasma gondii through Matrigel media, acquired by 3D microscopy and digitized by Imaris tracking sw, as published in [TBA]. Key sw components include a singular-value-decomposition (SVD) approach to fitting a modified Fourier series to noisy 3D coordinates measured at irregular time intervals (incorporating cross-validation for determining optimum Fourier order); correction for distortions arising from media shift, shrinkage/expansion; analytically-derived instantaneous velocity, curvature and twist/torsion parameters calculated at regularly-sampled spatial intervals along the Fourier-smoothed trajectory; facilities for direct visualization and analysis of the raw and Fourier-fit trajectories, and their derived parameters, via interface with molecular graphics software (eg, PyMol.)

Commodity class to facilitate interaction between MATLAB and Bitplane Imaris via COM or ICE interface.

Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. Home page: http://mib.helsinki.fi