Search Results for "cross correlation"
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Showing 24 open source projects for "cross correlation"
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. For example, we offer the generic SurrogateTest, which is fully compatible with TimeseriesSurrogates.jl, and the LocalPermutationTest for conditional independence testing. -
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PhoneInfoga
Information gathering framework for phone numbers
PhoneInfoga is an open-source intelligence framework focused on gathering and analyzing information related to international phone numbers. The tool aggregates data from multiple scanners and external services to provide contextual intelligence such as country, carrier, line type, and potential VoIP provider details. It is designed primarily for investigators, analysts, and security researchers who need structured phone-number reconnaissance rather than real-time tracking. PhoneInfoga... -
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unwarp
Increase image resolution by eliminating atmospheric distortion
Unwarp is an open-source tool that enhances image resolution by eliminating scintillations caused by atmospheric turbulence and similar distortion phenomena. The software processes a series of images of the same subject, aligning and stacking them using advanced feature selection algorithms and phase correlation approaches. The core technique matches features between images, applies triangulation across the entire frame, and warps each pixel to its optimal position. The resulting aligned... -
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CT4AM
Tools for 3D image analysis of additively manufactured parts
CT4AM is a cross-platform toolkit for 3D-image processing in the domain of additive manufacturing for toolpath visualisation or correlation to tomographic data and related materials science. It is written in C++ and provides small, problem-specific applications for viewing, analysing and visualising of volumetric data from micro-CT scans with respect to the complex process parameters and characteristics of additive manufacturing. -
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StatAnt
The package for statistical data analysis
Aspire to perfection. The high performance open source package for statistical data analysis StatAnt is a standalone cross-platform application. Completely free. No donation required. StatAnt comes with absolutely no warranty. The software is not certified for use in healthcare. Please do not use this software for purposes related to diagnosing diseases or making treatment decisions. -
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Euler Pole Calculator (EPC)
A Matlab software to estimate Euler pole parameters
The EPC software calculates velocities for any points located on the earth’s surface given the Euler pole parameters and estimates the Euler pole parameters given the observed velocities of a set of sites located on a tectonic plate. Since version 2, the software is able to estimate or apply the Plate Translation Rates, as well. Please cite one of the following papers when you use the software: - Goudarzi, M A, Cocard, M, and Santerre, R. 2014."EPC: Matlab Software to Estimate Euler... -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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Adherence terapeutic
Development of a scale that measures adherence in chronic patients
The different studies have shown the lack of a universal measurement system or gold standard, for which a scale has been developed using the most representative theoretical and empirical models, the objective is to validate the scale and verify the factors that influence. Validation study is carried out through a cross-sectional descriptive observational study of nursing consultations, of chronic patients, located in a hospital. Reliability of 0.846 is obtained from the scale under study, with an interclass correlation of 0.149. The scale is modified with nine items, obtaining a reliability of 0.750, and with an intraclass correlation of 0.835. ... -
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YeastpRofileSpearman
Software to calculate profiles around TSS and TTS of yeast mRNAs
YeastpRofileSpearman is a portable Windows form application, written in C#, to compute the profile of a genomic variable around transcription start (TSS) and termination (TTS) sites of yeast mRNAs. It is variation of the software application YeastpRofile (https://sourceforge.net/projects/yeastprofile/) in which Spearman’s rank correlation coefficient (Rs) is computed in place of Pearson correlation coefficient. The profile is obtained by calculating the genome-wide Rs between the genomic variable values and the TSS (or TTS) counts at incremental shifting of transcribed strand. The data of TSS and TTS counts used to compute the cross-correlation profiles were taken from the work of Pelechano et al. (1). ... -
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EMAP
A Cloud-Edge Framework for EEG Monitoring and Real-time Anomaly Pred.
...This work was published and presented at Design Automation Conference 2020 (DAC 2020). In case of usage please refer to: B. S. Prabakaran, A. G. Jiménez, G. M. Martínez, M. Shafique, “EMAP: A Cloud-Edge Hybrid Framework for EEG Monitoring and Cross-Correlation Based Real-time Anomaly Prediction”, IEEE/ACM 57th Design Automation Conference (DAC), July, 2020, (Accepted). -
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CorNetMap
A tool for Gene Expression Correlation Network
...Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation: https://sourceforge.net/projects/cornetmap/files/Documentation_corNetMap.pdf Sample data for testing: https://sourceforge.net/projects/cornetmap/files/Test%20Data/ Citation: Cite CornetMap as " Khaund, A. ... -
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Volterra2.0
Volterra series Identification Tool
...This feature reduces the identification noise on lower order kernels and improve the "resolution" on higher order kernels. For reference see: Simone Orcioni. Improving the approximation ability of Volterra series identified with a cross-correlation method. DOI:10.1007/s11071-014-1631-7. pp.2861-2869. In NONLINEAR DYNAMICS - ISSN:0924-090X vol. 78 (4) 2014. -
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers are optimized for the heterogeneous ensemble of classifiers aiming to attain better generalization performances on testing datasets. -
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GPS Interactive Time Series Analysis
A software for processing and analyzing time series in Earth Science
Along with calculating basic statistics and quality parameters such as mean and variance, the soft-ware is capable of importing and visualizing different standard time series formats, determining and removing jumps and outliers, and makes numerical and publication quality graphical outputs. Bivariate statistical analysis (including correlation coefficient and linear regression) and time series analysis (including auto and cross-spectral analysis, wavelet power spectrum, spectrogram and periodicities) form the main analysis features of the software. -
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). ... -
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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PANet
climate networks
PANet is a small C++ code that computes cross correlations between a set of time series, based on small snapshots of the data, in order to see the dynamical evolution of the relations between each two time series. Its most important output is the highest peak of the cross correlation function. It also gives info such as the second peak, the time delays of both peaks, and the standard deviation of the cross correlation function. -
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ArchTEx
Accurate Extraction and Visualization of Next-Generation Sequence data
Quick extraction and visualization of NGS Data. Allows for calculation of strand cross-correlation to identify optimal short-read tag extension. Allows for extraction of data using a variety of data transformations. Performs genome-genome correlation of BAM files to assist in comparison of biological and technical replicates. http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts063.abstract -
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Virtual Stereoplotter
The Digital Stereo Aerial Photograph Processing Software
Virtual Stereoplotter is a digital stereo aerial photograph processing software that built by using Visual Basic 2010 Express based on integrating the open source components and libraries which are DotSpatial 1.2, GeoStatisticalTool, MathNet.Numerics and ZedGraph. This software capable to perform the Interior Orientation, Cross Correlation, Single Model Bundle Adjustment, Inverse Distance Weighted and Median Filtering to obtain Digital Surface Model (DSM) with spatially referenced in raster. The DSM's quality and accuracy is controlled by aerial photograph's quality, Ground Control Point's quality and Tie Point's quality. This software designed and written by Rendy Putra Maretika under supervision of Nur Mohammad Farda, S.Si., M.Cs. ... -
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NCC/FASTNCC(DELPHI/PASCAL)
normalized cross correlation algorithm in DELPHI / PASCAL
this project is a public implementation of the normalized cross correlation algorithm. the performance will be much worse in comparison to commerical products, it is made for training and education purpose only. the project is done with DELPHI XE2 but you should be able to run that code with minor changes also with older compiler versions of DELPHI or even with FREE PASCAL LAZARUS . if you search for FAST NCC you will see a lot of pages explaining how to speed up that simple implementation, i#m looking for support creating here a public high speed NCC/fast NCC implementation in DELPHI -
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Tangerine is a protein sequence alignment tool based on cross-correlation. Its aim is to provide maximum sensitivity while being computationally efficient.
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Software Oscilloscope, Stimulus/Function Generator, Data acquisition and real-time analysis for applications in neurophysiology, behavioral biology, and beyond
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A suite of programs for performing particle image velocimetry, a common technique in the field of fluid mechanics. The suite includes programs to perform cross-correlation, synthetic image generation, as well as graphical visualization.
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This Java native library wraps OpenCV (Computer Vision Lib.) function cvMatchTemplate and implements methods for utilities result visualization. It allows efficient images template matching using Normalized Cross-Correlation (NCC) and others algorithms.
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