Search Results for "biodiversity"
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Showing 26 open source projects for "biodiversity"
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ECOLOG
A database management system for ecological field surveys
ECOLOG is a specimen-based, cross-platform relational database management system, aimed at the storage, retrieval and preliminary analysis of data on sites, species, and specimens gathered in ecological field surveys and biodiversity inventories. The main goal of ECOLOG is to make the data gathered in ecological field surveys readily accessible, providing lists of species collected in the study area and informations on habitat preferences, abundance or rarity of a given species, biometrics... -
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ArcGIS-NRA-Tool
National Responsibility Assessment for Endangered Species/Habitatats
.../~yplin/Scales-Taiwan.htm The code can be found here: https://sourceforge.net/p/arcgis-nra-tool/code/ci/main/tree/ References: Lin YP, Schmeller DS, Ding TS, Wang YC, Lien WY, et al. (2020) A GIS-based policy support tool to determine national responsibilities and priorities for biodiversity conservation. PLOS ONE 15(12): e0243135. doi: 10.1371/journal.pone.0243135 -
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e-Species
A taxonomically intelligent biodiversity search engine
This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's. -
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Specify Software
Biodiversity Database Platform
Specify is a biological collections and species occurrence database management platform for zoological museums, herbaria and other biodiversity specimen repositories. Specify is supported by grants from the Division of Biological Infrastructure, U.S. National Science Foundation and the State of Kansas. A web browser application, Specify 7, is available on GitHub. In 2015, 450 biological collections worldwide use Specify Software for collections data management. An iPad app, Specify Insight... -
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Stable collection identifiers
persistent identifiers for collection objects
Natural history collections are estimated to hold more than 2.5 billion specimens worldwide, a major proportion of which is owned by CETAF organisations. Being the only physical evidence of the past occurrence of organisms in space and time and therefore a tremendously important fundament for biodiversity research, it is crucial that biological collection objects can be consistently referenced with globally unique and stable identifiers. Ideally, such as system has a mechanism for resolving... -
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The open source home of the biodiversity image repository software that supports the morphbank.net repository, among others
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Acacia
A generic biodiversity database management system
An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard... -
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Symbiota
Mobilization of Biodiversity Data
Symbiota Virtual Flora/Fauna project is an open source software project with central goals of developing online search engines and tools that will aid in the exploration & management of biodiversity data (herbarium specimens, images, checklist, etc) -
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VBioindex
A Visual Tool to Estimate Biodiversity
Biological diversity, also known as biodiversity, is an important criterion for measuring the value of an ecosystem. As biodiversity is closely related to human welfare and quality of life, many efforts to restore and maintain the biodiversity of species have been made by government agencies and non-governmental organizations, thereby drawing a substantial amount of international attention. In the fields of biological research, biodiversity is widely measured using traditional statistical... -
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BALTICDIVERSITY
Towards transboundary access of nature observation data.
The partners of the BALTICDIVERSITY project are engaging in their first attempt to develop data exchange and joint platforms between the national databases concerned. This will help to address the transboundary problems such as the impact of climate change on biodiversity. The project has come up with a solution on how to connect data from the major natural history museums in the region into an interoperable whole, in order for this data to be better used for decision-making in nature... -
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DNA metabarcoding, which takes advantage of high throughput capacity of next-generation-sequencing (NGS) platforms, has emerged for characterizing the biodiversity of large volumes of eukaryote samples that consist of upwards of hundreds of thousands of individuals and thousands of species.
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Arthropod Easy Capture
An arthropod specific, specimen level data capture application
Arthropod Easy Capture (AEC) is an arthropod specific, open-source solution for handling specimen level host interactions. Developed in conjunction with the Plant Bugs Planetary Biodiversity, Tri-Tropic Interactions TCN, and Bee Database projects, AEC is designed for rapid, and accurate data capture, utilizing controlled vocabularies to maintain data quality. The application is Web-based, allowing for collaboration from multiple partners to a centralized, easily maintainable, database... -
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Sowseed
Seed sowing database to keep track of heirloom organic seeds
Sowseed is a browser based application using Apache, PHP and Mysql. Seeds are sown into trays which are numbered and barcoded. Against each seed tray the species are recorded along with the google map link of this location. There is a need for seed growers to preserve many varieties of heirloom seeds in order to maintain biodiversity. Several small groups hooked into the same database can benefit from a collaborative effect ensuring the greatest range of rare seeds are sown. Entries can... -
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Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.
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IBIS - Interactive Biodiversity Informatics Software - is software to identify species or other taxa. Intended users range from school children or citizen scientists to ecologists or taxonomists. The identification keys can be embedded in CMS or Wiki
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BIBMASTER is a database application to manage biodiversity projects. It's designed to make easier the compilation and management of taxa-level, specimen-level, nomenclatural and bibliographic information.
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BIBMASTER is a database application to manage biodiversity projects. It's designed to make easier the compilation and management of taxa-level, specimen-level, nomenclatural and bibliographic information.
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BIBMASTER is a database application to manage biodiversity projects. It's designed to make easier the compilation and management of taxa-level, specimen-level, nomenclatural and bibliographic information.
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This software uses data gathered from published biodiversity inventories, together with physical and vegetational maps, to build a biodiversity map (darkening geographical landscape according with the richness/diversity of species).
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biodivDP is a web application that can be used for accumulation and dissemination of, but not limited to, biodiversity and taxonomy specific data.
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DIVA-GIS is a geographical information system to analyze plant biodiversity data. It was developed at the International Potato Center (CIP) to help curate it's genebank data; additional support was subsequently obtained from IPGRI.
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BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
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The University of Colorado Museum (UCM), Denver Museum of Nature and Science (DMNS), and Denver Botanic Gardens (DBG) are collaborating to convert their separate collections into one distributed biodiversity database using Apache, Tomcat, and ArcIMS.
