Compare the Top Payroll Software for Linux as of April 2026

What is Payroll Software for Linux?

Payroll software helps businesses automate the payment of salaries and wages to their employees. It is used to calculate and process payroll payments, manage employee information, and generate reports. It is a convenient and efficient way to ensure that employees are paid on time and accurately. Payroll software typically includes features for generating paychecks, direct deposit, tax filings, generating year-end tax forms (such as W-2s), and maintaining accurate payroll records. Additionally, many payroll software solutions integrate with time-tracking systems, HR management tools, and accounting software to simplify overall business operations and ensure accuracy in payroll processing. Compare and read user reviews of the best Payroll software for Linux currently available using the table below. This list is updated regularly.

  • 1
    QuickBooks Online
    QuickBooks Online is the most popular accounting software in the world. QuickBooks Online makes accounting easy. Make tracking receipts, income, bank transactions, and more feel simple with the #1 small business accounting software. Snap photos of your receipts and link them to expenses right from your phone. Our agents are ready and available to answer all your QuickBooks questions. Use the apps you know and love to keep your business running smoothly. QuickBooks Online works on your PC, Mac, tablets, and phones. Click the link above to get a 30 day free trial and 50% off your first 3 months. More than accounting software. QuickBooks helps you track income, expenses, and stay ready for taxes. Customers find on average $3,534 in tax savings per year. Need more help? QuickBooks Live helps you stay organized and be ready for tax time. QuickBooks comes with a mobile app that help you run your business on the go—anytime, anywhere.
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    Starting Price: $9/month (normally $15/month)
  • 2
    Paycom

    Paycom

    Paycom

    At Paycom, we transform how businesses manage HR and payroll with automated, command-driven technology. Built in a single database, our tools work together to automate the entire employee life cycle. With our command-driven AI engine, IWant™, clients get instant access to accurate data without having to navigate the software. Our app simplifies life for clients and their employees, freeing HR to tackle its most important work. With more time to focus on strategic initiatives, businesses can drive growth, improve productivity and enhance the overall employee experience. Paycom is proud to support businesses of all sizes across the U.S. and internationally.
  • 3
    TimeTrex

    TimeTrex

    TimeTrex

    Rules can be automatically applied to specific employees or situations to automate all calculations, including overtime, premiums and multiple pay rates! Managers can remotely monitor and get up to the second reports regarding employee time and attendance, from anywhere at anytime. Eliminate waiting until the end of the pay period to review attendance records. Setup an unlimited number of accruals to automatically track employee vacations, sick days or banked time. Employees can also see their own accrual balances, eliminating time-consuming requests to human resources to lookup that information. Management has fine-grained control and tracking over where employees are able to punch in/out from, including down to the device and GEO fence level. Allocate time to jobs / tasks and track employee expenses while in the field. Handle employee skills / qualifications and process payroll with just a few clicks.
    Starting Price: $5 per month
  • 4
    ATSTimeWork OnDemand

    ATSTimeWork OnDemand

    Apex Time Solutions

    ATSTimeWorkOnDemand provides an open and integrated human capital management solution that automates your people and payment processes to save time and reduce manual, paper-based administration. ATS employee self-service access to payroll, HR and benefits data, empower your people to take control of their own information. Get help managing compliance, and delivering payroll data-related information in an accurate and timely manner. With ATSTimeWorkOnDemand companies can manage schedules, track time and attendance, administer absence and leave, and measure productivity — all streamlined through automation to engage your workforce and achieve better business results. 24/7, 365 days a year- anytime, anywhere from any device to real-time information and personalized data empowers managers and employees to make more informed decisions in the moment for better outcomes. ATSTimeWorkOnDemand powerful reporting, machine learning and analytics provides executives, and departmental managers.
    Starting Price: $2.00-$5.00 per month
  • 5
    Sapience HCM

    Sapience HCM

    Sapience Technology LLC

    Sapience HCM is a comprehensive human resource and payroll management solution (HRMS). Its Modular structure allows maximum flexibility and customization and you can implement only the functionality required by your organization from Hire to Retire. Sapience HRMS streamlines human resource management by capturing data at the point of entry, applying your business rules and automating transaction processing. Accurate and timely data is the foundation to powerful reporting and analysis in Sapience HRMS. Sapience HCM empowers your employees and creates efficiencies in your processes. From hire to retire, it supports productivity, enables intelligent reporting and, most importantly, makes your people feel appreciated for the work they do.
    Starting Price: $5/Employee/Month
  • 6
    Factorial

    Factorial

    Factorial

    Factorial is a cloud-based business management software built specifically to empower small and medium-sized businesses. It’s not just an HR tool—it’s a comprehensive employee management software that combines automation, data, and a people-first approach to help companies scale with confidence. Track employee working hours, manage shifts, approve time off, and visualize workloads. Our cloud business management software integrates time tracking directly with payroll and project management to eliminate manual entry and errors. From sick leave to unlimited PTO policies, Factorial simplifies leave tracking through automated approval workflows, custom policy creation, and team-wide calendar visibility. It’s no surprise we were ranked the #1 PTO Tracker of 2025. From applicant tracking to onboarding, from performance reviews to training plans—Factorial supports the full employee lifecycle. Build strong, engaged teams and scale faster without needing multiple disconnected tools.
    Starting Price: $8/month/user
  • 7
    eNETEmployer

    eNETEmployer

    CanPay Payroll Software

    eNETEmployer offers total employee management through a suite of online tools for Human Resource, Payroll, and Applicant Tracking / Recruitment. Use it to empower your business and reduce the rising costs associated with employee management. Convenient, Cost Effective and Reliable - Imagine the convenience of calculating your payroll at a time that's convenient to you. If you have an internet browser, you're ready to work with the program - it's that simple. And if you’re currently outsourcing your payroll, eNETEmployer will perform all the same functions at a fraction of the cost. And with no more software backups and updates to perform, you can be assured that the program is at the ready when you are.
    Starting Price: $11.30 per pay
  • 8
    CARDZ3N

    CARDZ3N

    CARDZ3N

    CARDZ3N supports global payments for credit cards, ACH, SEPA, and Crypto (140+ coins). CARDZ3N processes payments for emerging markets & high-risk businesses, including CBD, crypto exchanges, gambling, travel, and more. We also offer a Stripe Alternative with rates starting at 2.25% for non-profits & 2.75% & $0.25 for e-commerce. CARDZ3N also offers other payment options, such as ACH, payroll and HR, benefits, or business capital. CARDZ3N Our mission is to solve the most pressing problems facing our clients, large and small. Our unique approach is what distinguishes us and what makes us different. We offer a wide range of services and solutions that help organizations achieve their vision, facilitate change, and maximize performance and productivity.
  • 9
    Twenty20 Construction Cloud

    Twenty20 Construction Cloud

    Hindsight Technologies

    Twenty20 is the first full-featured ERP solution for contractors of all sizes that is 100% customizable to your specific needs. Twenty20 is Easy to learn, Easy to setup, and Easy to use. Modules include: -Accounting - Project Management - Document Management - Estimating - Scheduling - Service Management and Work Order Management - Equipment & Fleet Management Management - Human Resource Management - Leave Management - Time and Attendance Tracking - Expense Report Management - Sales and CRM Our ideal customer: is a contractor that has multiple systems to manage their business and looking for ONE complete solution that is fully integrated and customizable to their needs and requirements.
    Starting Price: $350.00/month
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