Loupe Browser

Loupe Browser

10x Genomics
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About

Stop wresting with cloud infrastructure and broken informatics tools. Start discovering biological insights today. Scientific discovery is bottlenecked by the fragmentation of tooling across biology and bioinformatics teams. We built a harmonized bioinformatics platform between wet lab and dry lab in the cloud to help teams accelerate their R&D. Import raw data from your cloud, your service provider, or your team's instruments. Develop and deploy custom bioinformatics workflows in any language. Stop wrestling with your infrastructure. Easily run any workflow and keep a log of every analysis. Ready-to-go interactive visualizations for NGS data with point-and-click plots. Latch supports integration with your organization’s AWS S3. Access hundreds of terabytes of data in an organic filesystem you are familiar with. Define bioinformatics workflows and dynamically generate no-code interfaces using Python with tunable compute and storage.

About

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Laboratories and research companies requiring a solution to discover biological insights

Audience

Labs interested in a solution to manage, analyze, and visualize their research data

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

No information available.
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

LatchBio
United States
latch.bio/

Company Information

10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest

Alternatives

Nextflow

Nextflow

Seqera Labs

Alternatives

Pluto

Pluto

Pluto Biosciences
Parse Biosciences Evercode

Parse Biosciences Evercode

Parse Biosciences
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights

Categories

Categories

Integrations

Amazon S3

Integrations

Amazon S3
Claim LatchBio and update features and information
Claim LatchBio and update features and information
Claim Loupe Browser and update features and information
Claim Loupe Browser and update features and information