Loupe Browser

Loupe Browser

10x Genomics
+

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About

Store, archive, manage, and collaborate on multi-omic datasets. Illumina Connected Analytics is a secure genomic data platform to operationalize informatics and drive scientific insights. Easily import, build, and edit workflows with tools like CWL and Nextflow. Leverage DRAGEN bioinformatics pipelines. Organize data in a secure workspace and share it globally in a compliant manner. Keep your data in your cloud environment while using our platform. Visualize and interpret your data with a flexible analysis environment, including JupyterLab Notebooks. Aggregate, query, and analyze sample and population data in a scalable data warehouse. Scale analysis operations by building, validating, automating, and deploying informatics pipelines. Reduce the time required to analyze genomic data, when swift results can be a critical factor. Enable comprehensive profiling to identify novel drug targets and drug response biomarkers. Flow data seamlessly from Illumina sequencing systems.

About

The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data. Graph reference genome and machine learning driving unprecedented accuracy. Provides ultra-efficient workflow; can fully process a 34x whole human genome in ~30 minutes with DRAGEN server v4. Furthers ultra-efficient workflow by reducing FASTQ file sizes up to 5×. Analyzes next-generation sequencing (NGS) data from whole genomes, exomes, methylomes, and transcriptomes. Available on platform of choice and scalable based on needs. DRAGEN analysis leads in accuracy for germline and somatic variant calling demonstrated in industry challenges from precisionFDA. DRAGEN analysis enables labs of all sizes and disciplines to do more with their genomic data. DRAGEN analysis uses highly reconfigurable field-programmable gate array technology (FPGA) to provide hardware-accelerated implementations of genomic analysis algorithms.

About

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Scientists requiring a genomic data platform to operationalize informatics and drive insights

Audience

Researchers needing a solution to get efficient secondary analysis of next-generation sequencing data

Audience

Labs interested in a solution to manage, analyze, and visualize their research data

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Screenshots and Videos

Pricing

No information available.
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

Illumina
United States
www.illumina.com/products/by-type/informatics-products/connected-analytics.html

Company Information

Illumina
United States
www.illumina.com/products/by-type/informatics-products/dragen-secondary-analysis.html

Company Information

10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest

Alternatives

Alternatives

Alternatives

OmnibusX

OmnibusX

OmnibusX Company Limited
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights
Parse Biosciences Evercode

Parse Biosciences Evercode

Parse Biosciences
GenomeStudio

GenomeStudio

Illumina
VarSeq

VarSeq

Golden Helix

Categories

Categories

Categories

Integrations

Amazon S3
Amazon Web Services (AWS)
BaseSpace Sequence Hub
Correlation Engine
Docker
Emedgene
Illumina Connected Analytics
Illumina DRAGEN Secondary Analysis
JupyterLab
Nextflow

Integrations

Amazon S3
Amazon Web Services (AWS)
BaseSpace Sequence Hub
Correlation Engine
Docker
Emedgene
Illumina Connected Analytics
Illumina DRAGEN Secondary Analysis
JupyterLab
Nextflow

Integrations

Amazon S3
Amazon Web Services (AWS)
BaseSpace Sequence Hub
Correlation Engine
Docker
Emedgene
Illumina Connected Analytics
Illumina DRAGEN Secondary Analysis
JupyterLab
Nextflow
Claim Illumina Connected Analytics and update features and information
Claim Illumina Connected Analytics and update features and information
Claim Illumina DRAGEN Secondary Analysis and update features and information
Claim Illumina DRAGEN Secondary Analysis and update features and information
Claim Loupe Browser and update features and information
Claim Loupe Browser and update features and information