Loupe Browser

Loupe Browser

10x Genomics
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About

BigOmics Analytics is a biodata analytics startup developing platforms for biologists to easily visualize and understand their omics data. Our flagship product, Omics Playground, is a user-friendly bioinformatics software for RNA-seq and proteomics data that allows users to store and interactively visualize data from experiments. BigOmics Analytics offers over 18 interactive analysis modules and 150+ interactive plots, enabling co-analysis with more than 6,000 public datasets and access to 50,000+ public gene sets and pathways. The platform also integrates drug connectivity and drug sensitivity databases with over 30,000 drug expression profiles. Designed to facilitate collaboration between biologists and bioinformaticians, BigOmics Analytics helps users discover more while spending less time on data analysis, all without requiring coding skills. The platform ensures robust and reproducible results by utilizing best-in-class methods.

About

Loupe Browser is a powerful visualization software that provides the intuitive functionality you need to explore and analyze your 10x Genomics Chromium and Visium data. You can also convert your Seurat objects into Loupe Browser files using the LoupeR package. The navigation and interactive functionality of the Loupe Browser interface uses a lung squamous cell carcinoma dataset. The workspace is centered around the view panel in which single points representing cell barcodes are shown in a variety of projections. Each point represents a single barcode, the vast majority of which correspond to a single cell. The default projection is the t-SNE plot created by the cell ranger pipeline, though other projections are available. You can drag the mouse over the cells to reposition the plot and use the mouse wheel or trackpad to zoom in and out. Cluster labels appear as you move your mouse over the plot, which is useful for data that has a high number of precomputed clusters.

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Platforms Supported

Windows
Mac
Linux
Cloud
On-Premises
iPhone
iPad
Android
Chromebook

Audience

Biologists and bioinformaticians wanting a solution to analyze and visualize RNA sequences and proteomics data

Audience

Labs interested in a solution to manage, analyze, and visualize their research data

Support

Phone Support
24/7 Live Support
Online

Support

Phone Support
24/7 Live Support
Online

API

Offers API

API

Offers API

Screenshots and Videos

Screenshots and Videos

Pricing

No information available.
Free Version
Free Trial

Pricing

No information available.
Free Version
Free Trial

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

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Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software

Training

Documentation
Webinars
Live Online
In Person

Training

Documentation
Webinars
Live Online
In Person

Company Information

BigOmics Analytics
Founded: 2018
Switzerland
bigomics.ch/

Company Information

10x Genomics
Founded: 2012
United States
www.10xgenomics.com/support/software/loupe-browser/latest

Alternatives

Alternatives

Parse Biosciences Evercode

Parse Biosciences Evercode

Parse Biosciences
OmicsBox

OmicsBox

BioBam Bioinformatics S.L.
Cellenics

Cellenics

Biomage

Categories

Categories

Integrations

No info available.

Integrations

No info available.
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