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Name	Modified	Size	InfoDownloads / Week
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picard-tools-1.78.zip	2012-10-09	35.7 MB	1
README.txt	2012-10-09	812 Bytes	0
Totals: 2 Items		35.7 MB	1

Picard release 1.78
9 October 2012

- IlluminaBaseCallsToSam bug fixes:
  - Fix hang if a worker thread ran out of memory.
  - Fix bug in which failure of worker thread would result in successful program exit status.
  - Bug fix: Throw exception when barcodes that were not provided in libraray_params were read from tile.

- Fluidigm:
  - IlluminaUtil.java: Added adapters for fluidigm access array.
  - IlluminaBasecallsToSam.java: Added fluidigm access array adapters to the default set of adapter sequences to look for and trim.

- Make SamRecordIntervalIterator.close() idempotent.

- SAM header version number:
  - Change version number output in SAM text header to 1.4.
  - Change ViewSam so that it outputs whatever was the version number in the input, rather than always replacing with CURRENT_VERSION.

Source: README.txt, updated 2012-10-09

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