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Name	Modified	Size	InfoDownloads / Week
Parent folder
picard-tools-1.60.zip	2012-01-17	32.9 MB	0
README.txt	2012-01-17	705 Bytes	0
Totals: 2 Items		32.9 MB	0

Picard release 1.60
17 January 2012

- Modified ExtractIlluminaBarcodes to handle dual barcodes.  Metrics file contains barcode read bases separate by slashes, barcode.txt files concatenate all the barcode read bases with no separator.  Removed BUSTARD_DIR option, which has been deprecated in favor of BASECALLS_DIR.

- Eliminate SamFileHeaderMerger.addIterator, and instead add another ctor that allows for passing iterators in the ctor.  Use LinkedHashMap instead of ArrayList in SamFileHeaderMerger for speed. Patch courtesy of Matt Hanna.


- FilteringIterator.java: assert that reads are in SortOrder.queryname when filtering pairs

- SamToFastq.java: Added a little progress logging to SamToFastq.

Source: README.txt, updated 2012-01-17

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