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Name	Modified	Size	InfoDownloads / Week
Parent folder
picard-tools-1.40.zip	2011-02-15	8.3 MB	0
README.txt	2011-02-15	701 Bytes	0
Totals: 2 Items		8.3 MB	0

Picard release 1.40
15 February 2011

- CollectMultipleMetrics.java: Made sure that the list of programs to run is unique.

- Faster implementation of MeanQualityByCycle that cuts off about 2/3 of the runtime.

- Adds a .equals method to MetricBase that compares the values for all public fields in the class; modifies MetricFile to have separate comparison methods for header, metrics, and histogram and to call all three of them in the .equals method.  FormatUtil now handles Bytes.

- QualityScoreDistribution.java, MetricsFile.java: Fixed to cope with the situation when there are no valid bases in an input sam/bam file.

- Hack to fix strange problem with reading BAM via HTTP from SourceForge.

Source: README.txt, updated 2011-02-15

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