OpenMS Files

OpenMS 1.10 released

We are proud to announce the OpenMS 1.10 release with many major additions
and bug fixes.

Much work has been put to make OpenMS 1.10 compatible to the KNIME (
www.knime.org) workflow system which will in future extend
the capabilities for down stream analysis. If you are interested in
bleeding edge tools you can already try out OpenMS in KNIME (Note: That the
integration is still in a beta.). A quick tutorial is given at the end of
this overview.


*Download:*
https://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.10/

*Supported Platforms:*

 - Windows installer (32 and 64 bit)
 - MacOS X installer (64 bit)
 - Linux (source code package only)

Other unix-like platforms should compile, but are not officially supported.
Please note that currently there is no working installer for the older Mac OS X 10.6. We will provide one as soon as possible.


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Most important changes at a glance:

*Installation process:*
Search engines (OMSSA, X!Tandem, and MyriMatch) have been integrated into
the Windows and Mac installers making the install process more convenient.

*New tools:*

   - OpenSWATH
   - QCCalculator
   - IDRipper
   - FeatureFinderMetabo
   - IDEvaluation
   - RNPxl
   - TMTAnalyzer

*New file format support:*

   - TraML 1.0.0
   - mzQuantML (experimental)
   - mzIdentML (experimental)
   - mzTab (experimental)

*General:*

   - Better chromatogram support
   - Decoy strings can now be prepended
   - Filtering of modified peptides
   - numerous memory and speed improvements
   - TMT-6plex support
   - EDTA conversion from feature and consensusXML in FileConverter
   - Filtering of MS2 spectra by identifications
   - FeatureFinderCentroided now supports non natural isotopic abundancies
   - and more …

*New search engine support:*

   - MyriMatch adapter

*Fixed Bugs:*

A full list of fixed bugs and new features in OpenMS 1.10 can be found in
our issue tracker at Sourceforge. Just click on the link below to see the
full list.

OpenMS 1.10 fixed bugs and added features <http://sourceforge.net/apps/trac/open-ms/query?status=closed&group=resolution&milestone=Release+1.10>

*Installing OpenMS support in KNIME:*
To do so, you need to download and install KNIME 2.7.2 available from
www.knime.org. To add OpenMS to KNIME you first have to click on Help ->
Install New Software and “Add” following installation source in the new
window:

Name: KNIME Nightly Unstable
Location: http://tech.knime.org/update/community-contributions/nightly/

After clicking on “Ok” KNIME automatically checks the site. In “Community
Contributions – Bioinformatics & NGS” you will now find OpenMS. Select it
and click “Next”. After download and restart you will find under “Community
Nodes” the “Generic KNIME Nodes” and OpenMS nodes.

If you encounter bugs or want to provide feedback please visit
http://www.openms.de/support/bugs/

The OpenMS Developers