please cite:
An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275.

We will create index for you if you tell us your interested plants (j.an@qut.edu.au).

Features

  • java source code "miRPlant.zip" can be found clicking "Browse All Files" on the right corner of this windows. Netbeans IDE was used
  • speeded up in v4, the command line version can be found by clicking "Browse All Files"
  • bug fixed. in v2, the read count was incorrect in xxxx.known_miR.result file, when the inputted bam file was generated in BWA etc.
  • bug fixed. in v1, exception appeared when clicking "save image" in the popup window In Mac.

Project Samples

mirplant Screenshot 1

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

Follow mirplant

mirplant Web Site

Other Useful Business Software
MongoDB Atlas runs apps anywhere Icon
MongoDB Atlas runs apps anywhere

Deploy in 115+ regions with the modern database for every enterprise.

MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of mirplant!

Additional Project Details

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2014-01-06
Report inappropriate content