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MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full.
If you are using this pipeline for your work, please cite:
Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999
The instructions on configuring and running the MetaErg pipeline is available at GitHub repository: https://github.com/xiaoli-dong/metaerg
Features
- a stand-alone and fully automated metagenomic and metaproteomic data annotation pipeline.
- It bundles essential annotation tasks such as feature prediction, functional annotation with Hidden Markov Model (HMM) searches as well as blast and diamond searches.
- It estimates and visualizes quantitative taxonomic and pathway compositions of multiple metagenomic and proteomics samples
- It provides a HTML interface, bringing all annotation results together in sortable and searchable tables, collapsible trees, and other graphic representations, enabling intuitive navigation of complex data
- It has a Docker image available
Project Samples
License
Academic Free License (AFL)Follow MetaErg
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User Reviews
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Using it to annotate metagenomics samples, a good alternative to Prokka, MG-Rast and friends.