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Home / Systems Biology Workbench / 2.9.0
Name Modified Size InfoDownloads / Week
Parent folder
README.txt 2012-02-12 2.1 kB
0
SBW-2.9.0.dmg 2012-02-12 146.0 MB
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SBW-2.9.0-win32-installer.exe 2012-02-12 66.6 MB
5 5 weekly downloads
sbw-2.9.0-linux-installer.run 2012-02-10 22.4 MB
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sbw-2.9.0-0.i386.rpm 2012-02-10 27.3 MB
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sbw_2.9.0-0_i386.deb 2012-02-10 27.3 MB
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sbw-2.9.0-linux-x64-installer.run 2012-02-09 22.5 MB
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sbw-2.9.0-0.x86_64.rpm 2012-02-09 26.9 MB
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sbw_2.9.0-0_amd64.deb 2012-02-09 26.9 MB
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Totals: 9 Items   365.9 MB 5 
Feb 2012

We are pleased to announce the release of version 2.9.0 of the Systems
Biology Workbench. This release includes versions for Windows, Linux and
Mac OS X. Additionally we have virtual machines available from susestudio: 

32bit: http://susestudio.com/a/gNqXM5/sbw-290-gnome-desktop-x86 
64bit: http://susestudio.com/a/gNqXM5/sbw-gnome-desktop-x64  

the portable version is available from: 

http://sourceforge.net/projects/sbw/files/sbw/portable/


Changes in Version 2.9.0
===========================

SBML Layout: 
  - Reading Support for SBML Layout Extension (for SBML L3)
  - (at the moment the library only writes annotations though)
  - Stability and performance improvements for Layout Viewer.
  - SBGN upgrade
  - Bug Fix: Global Render Information were not correctly read
  - Stability: Now works even independently of SBW
    
SED-ML: 
  - Support for Kisao Terms (full lookup and browsing of the 
    hierarchy).
  - Bug Fixes for error correction facility

RoadRunner: 
  - BugFix: non integral stoichiometry for L1 models
  - BugFix: model refused to load when non-L3 model used ids in speciesreferences
  - BugFix: L1 model with local parameters refused to load
  - BugFix: L1 model with non-integral stoichiometry was incorrect
  - BugFix: hasOnlySubstanceUnits was ignored in some places

NOM: 
  - added methods: 
    reorderRules : string reorderRules(string)
    inlineFunctionDefinitions : string inlineFunctionDefinitions(string)
  - (rules are automatically reordered by loadSBML, this will allow other modules 
    to work correctly without code change)
  - fix: promote local to global parameters works for L1 models
	
Translators: 
  - sort assignment rules
  - added command line option -f <sbmlfile> to translate the SBML file
    and write the file to stdout, so they can be used from the command line.
  
Portable: 
  - we also have a version of SBW that you can install on a flash drive
    using portable apps.
  
All modules: 
  - updated to use libSBML 5.4.0

JDesigner: 
  - Fixed Chinese characters appearing when assigment rule was selected for editing.
Source: README.txt, updated 2012-02-12