IJ-Plugins Toolkit Release Notes v.2.1.0

IJ Plugins Toolkit is a set of ImageJ plugins.

Changes since 1.9.1

• Source code moved to GitHub ij-plugins/ijp-toolkit
• New SBT-based build system and new packaging approach.
• Coherence Enhancing Diffusion significantly improved, both in accuracy and speed.
• Seeded Region Growing Tool: add button to create seed image.
• MetaImage Reader/Writer: respect Origin tag, mapped into calibration x.y.z origin.
• MetaImage Reader: does not break on unknown tags, just ignores them.
• Removed deprecated DialogInfo and dependency in beanutil library.
• ijp-toolkit2 merged back into ijp-toolkit.

Requirements:

• Java 7 or better.

Release Files

• ijp-toolkit_bin_2.1.0.zip - main binaries including all dependencies. To install unzip to ImageJ plugins directory.

Installation

Autimatic Installation

For ImageJ 2 or Fiji you can install IJ-Plugins Toolkit using update center:

http://sites.imagej.net/IJ-Plugins/

Manual Installation

Uncompress content of ijp-toolkit_bin_*.zip to ImageJ's plugins directory. You can find location of ImageJ plugins directory by selecting in ImageJ "Plugins"/"Utilities"/"ImageJ Properties", look for value of tag "plugins dir" near the bottom of the displayed Properties' window.

Plugins

There are 36 plugins in this release:

• 3D IO

  • MetaImage Reader
  • MetaImage Writer
  • VTK Reader
  • VTK Writer
  • Export as STL

• 3D Toolkit

  • Connected Threshold Grower
  • Auto Clip Volume
  • Morphological Dilate 3D
  • Morphological Erode 3D
  • Median 3D

• Color (and miltiband images)

  • Lab* stack to RGB
  • Lab* stack to XYZ stack
  • RGB to Lab* stack
  • RGB to XYZ stack
  • RGB to YCbCr stack
  • YCbCr stack to RGB
  • XYZ stack to Lab*
  • XYZ stack to RGB
  • Measure Bands
  • Multiband Sobel edges
  • Multiband Difference edges
  • Multiband Gradient edges
  • Intensity shift

• Filters

  • Coherence Enhancing Diffusion
  • Fast Median
  • Perona-Malik Anisotropic Diffusion
  • Directional Coherence
  • Speckle Reducing Anisotropic Diffusion

• Graphics

  • Image Quilter

• Segmentation

  • k-means Clustering
  • k-means Clustering Reapply
  • Maximum Entropy Threshold
  • Maximum Entropy Multi-Threshold
  • Seeded Region Growing Tool ...
  • Seeded Region Growing ...
  • Set Pixels