gogadget Files

A toolbox for interpretation and visualization of RNA-seq GO analysis

Brought to you by: bennota

The interactive file manager requires Javascript. Please enable it or use sftp or scp.
You may still browse the files here.

Name	Modified	Size	InfoDownloads / Week
Parent folder
README	2017-01-17	608 Bytes	0
gogadget_usersguide.pdf	2017-01-17	722.7 kB	0
gogadget_1.0.tar.gz	2017-01-17	5.5 kB	0
Totals: 3 Items		728.8 kB	0

gogadget is an R package, and can help with the visualization and interpretation of GO enrichment analysis of RNA-seq data. It is developed especially for the use in combination with goseq.

The functions that are available in this package are extensively described in the user's guide.

To install the package download the "gogadget_1.0.tar.gz" file, open R and install with the following line:

install.packages( "C:/your/directory/gogadget_1.0.tar.gz", repos = NULL, type="source")

The package was made in R 3.3.1 on a Windows 7 computer. I am not sure if the package will work on Mac OS or Unix.

Source: README, updated 2017-01-17

Other Useful Business Software

Auth0 for AI Agents now in GA

Ready to implement AI with confidence (without sacrificing security)?

Connect your AI agents to apps and data more securely, give users control over the actions AI agents can perform and the data they can access, and enable human confirmation for critical agent actions.

Start building today

Context for your AI agents

Crawl websites, sync to vector databases, and power RAG applications. Pre-built integrations for LLM pipelines and AI assistants.

Build data pipelines that feed your AI models and agents without managing infrastructure. Crawl any website, transform content, and push directly to your preferred vector store. Use 10,000+ tools for RAG applications, AI assistants, and real-time knowledge bases. Monitor site changes, trigger workflows on new data, and keep your AIs fed with fresh, structured information. Cloud-native, API-first, and free to start until you need to scale.

Try for free

Recommended Projects

ADOMA
ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
RSeQC
RNA-seq data QC
Witch City Whisperer
Rolling Playlist 44.38
APAtrap
Identification of APA sites from RNA-seq data
dtreeviz
Python library for decision tree visualization & model interpretation

gogadget Files

A toolbox for interpretation and visualization of RNA-seq GO analysis

Get an email when there's a new version of gogadget