diauxic growth model ensemble Files

 Here, Matlab files are documentad related to the BMC Systems Biology
 publication "An ensemble of mathematical models showing diauxic 
 growth behaviour" (submitted in July, 2017)

 Two zip-files are provided

 (I) ensemble_diauxic_growth.zip

 Here, all matlab files are stored that are used for the simulation
 and cluster analysis:

 main_file_simulation.m     main file, runs all simulations

 diauxic_growth.mat         ID: A2 mat file with data from dynamic optimization
 diauxic_growth_time.mat    ID: A6 mat file with data from dynamic optimization

 mittel.m                   help file (smoothing output)
 parameter.m                all parameters
 plot_results.m             all plots

 sys_cata_2.m               ID: A5 PTS transport model 
 sys_cata_3.m               ID: A4 Non-PTS transport model
 sys_cata_bif.m             ID: R5 Bifurcation model
 sys_cata.m                 ID: R1,R2,R3,R4,N1,N2,N3,N4 full dynamic models
 sys_cost.m                 ID: C4 Cost & benefit model
 sys_crowding.m             ID: C3 Crowding
 sys_cyber.m                ID: A3 Cybernetic modeling
 sys_FBA2.m                 ID: C1 FBA modeling
 sys_resource.m             ID: A1 Resource allocation with FBA
 sys_rFBA.m                 ID: C2 Regulatory FBA

 (II) ensemble_diauxic_growth_fitted_models.zip

 Here, parameters for some model variants are modified to match 
 quantitatively experimental data:

 sim_fit                    main file
 parameter_fit              all parameters

 sys_cata.m                 ID: R1,R2,R3,R4,N1,N2
 sys_cost.m                 ID: C4 
 sys_crowding.m             ID: C3 
 sys_cyber.m                ID: A3 
 sys_FBA2.m                 ID: C1 
 sys_resource.m             ID: A1 
 sys_rFBA.m                 ID: C2