PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility.

CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations.

Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently translating these into the underlying mathematical structures.
.
CBMPy implements popular analyses such as FBA, FVA, element/charge balancing, network analysis and model editing as well as advanced methods developed for the ecosystem modelling.

CBMPy supports user interaction via:
- interactive console or as a library for advanced use
- GUI, visual representation of the model, analysis methods
- a SOAP based webAPI exposes high level functionality via web services

Features

  • support for modelling standards: SBML, SED-ML, SBML3FBC, OMEX (Combine archive)
  • supports MIRIAM compliant annotation as RDF as well as custom key-value data
  • multiple user interfaces, GUI CLI, NOUI
  • flexible, open architecture

Project Samples

PySCeS-CBMPy CBMPy GUI

Project Activity

See All Activity >

Categories

Simulation, Bio-Informatics, Web Services

License

GNU General Public License version 3.0 (GPLv3)

Follow CBMPy

CBMPy Web Site

Other Useful Business Software
The All-in-One Commerce Platform for Businesses - Shopify Icon
The All-in-One Commerce Platform for Businesses - Shopify

Shopify offers plans for anyone that wants to sell products online and build an ecommerce store, small to mid-sized businesses as well as enterprise

Shopify is a leading all-in-one commerce platform that enables businesses to start, build, and grow their online and physical stores. It offers tools to create customized websites, manage inventory, process payments, and sell across multiple channels including online, in-person, wholesale, and global markets. The platform includes integrated marketing tools, analytics, and customer engagement features to help merchants reach and retain customers. Shopify supports thousands of third-party apps and offers developer-friendly APIs for custom solutions. With world-class checkout technology, Shopify powers over 150 million high-intent shoppers worldwide. Its reliable, scalable infrastructure ensures fast performance and seamless operations at any business size.
Learn More
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of CBMPy!

Additional Project Details

Intended Audience

Advanced End Users, Education, End Users/Desktop, Science/Research

User Interface

Console/Terminal, wxWidgets

Programming Language

Python

Related Categories

Python Simulation Software, Python Bio-Informatics Software, Python Web Services Software

Registered

2012-06-22
Report inappropriate content