Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.

Features

  • Calculate volumes of internal cavities
  • Determine environment of ionizable residues
  • Calculate depth of burial for ionizable residues
  • Calculate packing density for ionizable residues

Project Activity

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Categories

Molecular Science, Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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Protein Cavity Search Web Site

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Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Python

Related Categories

Python Molecular Science Software, Python Bio-Informatics Software

Registered

2010-05-25
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