Download
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
Features
- shotgun or amplicon (e.g. 16S rRNA) read libraries
- omics support to generate genomic, transcriptomic, proteomic, metagenomic, metatranscriptomic or metaproteomic datasets
- arbitrary read length distribution and number of reads
- simulation of PCR and sequencing errors (chimeras, point mutations, homopolymers)
- support for paired-end (mate pair) datasets
- specific rank-abundance settings or manually given abundance for each genome, gene or protein
- creation of datasets with a given richness (alpha diversity)
- related datasets can share a variable number of genomes (beta diversity)
- modeling of the bias created by varying genome lengths or gene copy number
- profile mechanism to store preferred options
- available to biologists or power users through multiple interfaces: GUI, CLI and API
Categories
Bio-InformaticsLicense
GNU General Public License version 2.0 (GPLv2)Follow Grinder
Other Useful Business Software
99.99% Uptime for MySQL and PostgreSQL on Google Cloud
Cloud SQL Enterprise Plus gives you a 99.99% availability SLA with near-zero downtime maintenance—typically under 10 seconds. Get 2x better read/write performance, intelligent data caching, and 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server with built-in vector search for gen AI apps. New customers get $300 in free credit.
Rate This Project
Login To Rate This Project
User Reviews
-
Biogrinder is the best! Thanks.
-
Great App ,Excellent
-
great, thanks
-
Not working on Windows vista x64
-
Not operating on Windows 7
