C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.

Features

  • Make sequence to sequence alignment
  • Make profile to sequence alignment
  • Make profile to profile alignment
  • Use three different weighting schemes in the construction of profiles
  • Use eleven different scoring functions used in alignments against profile Profile
  • Use structural information of various kinds
  • Use of penalty functions for linear gap
  • Perform global, local and semi-global alignments

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2010-10-04
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