Download
Amazon Genomics CLI is an open-source CLI that helps customers run genomics workflows in the cloud by automating the deployment of best practices infrastructure for workflow engines. Amazon Genomics CLI reduces the time for scientists and developers to start running existing genomics workflows at scale and speeds up iteration cycles as they develop new ones. Amazon Genomics CLI is an open-source tool for genomics and life science customers that simplifies and automates the deployment of cloud infrastructure, providing you with an easy-to-use command-line interface to quickly setup and run genomics workflows on Amazon Web Services (AWS) specified by languages like WDL. By removing the heavy lifting from setting up and running genomics workflows in the cloud, software developers and researchers can automatically provision, configure and scale cloud resources to enable faster and more cost-effective population-level genetics studies, drug discovery cycles, and more.
Features
- To build from source you will need to ensure the prerequisites are met
- The Amazon Genomics CLI is written in Go
- To manage and install Go versions, we use goenv
- Amazon Genomics CLI makes use of the AWS CDK to deploy infrastructure into an AWS account
- Our CDK code is written in TypeScript
- You'll need Node to ensure the appropriate dependencies are installed at build time
Project Samples
