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#118 Add SBO for mass action rate law for reversible reactions, continuous scheme

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5
2017-03-10
2017-02-10
No

Hello,

I am missing an equivaliant for http://biomodels.net/SBO/#SBO:0000163 for reversible reactions.
This new term should be a child of: http://biomodels.net/SBO/#SBO:0000078 with the following definition.

<semantics definitionURL="http://biomodels.net/SBO/#SBO:0000062"> <lambda> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:000035">k1</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000157">n1</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000158">mu1</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000509">R</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000039">k2</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000490">n2</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000158">mu2</ci></bvar> <bvar><ci definitionURL="http://biomodels.net/SBO/#SBO:0000512">P</ci></bvar> <apply> <minus></minus> <apply> <times></times> <ci>k1</ci> <apply> <product></product> <bvar><ci> i </ci></bvar> <lowlimit><cn type="integer"> 0 </cn></lowlimit> <uplimit><ci> n1 </ci></uplimit> <apply> <power></power> <apply> <selector></selector> <ci type="vector">R</ci> <ci> i </ci> </apply> <apply> <selector></selector> <ci type="vector">mu1</ci> <ci> i </ci> </apply> </apply> </apply> </apply> <apply> <times></times> <ci>k2</ci> <apply> <product></product> <bvar><ci> i </ci></bvar> <lowlimit><cn type="integer"> 0 </cn></lowlimit> <uplimit><ci> n2 </ci></uplimit> <apply> <power></power> <apply> <selector></selector> <ci type="vector">P</ci> <ci> i </ci> </apply> <apply> <selector></selector> <ci type="vector">mu2</ci> <ci> i </ci> </apply> </apply> </apply> </apply> </apply> </lambda> </semantics>

Thanks,
Stefan

Discussion

  • Nick Juty

    Nick Juty - 2017-02-27
    • status: open --> accepted
    • assigned_to: Varun Kothamachu
    • Group: demo --> main
     
  • Varun Kothamachu

    Dear Stefan,

    As per your request, this term has now been created (SBO:0000646). We are currently unable to add your mathml definition due to a bug in the system. The team is looking into it and will soon have it fixed. We will then update the term with the Mathml definition.

    Varun

     
  • Varun Kothamachu

    • status: accepted --> pending
     
  • Varun Kothamachu

    • status: pending --> closed
     
  • Varun Kothamachu

    Mathml for this term has been updated and the bug has been fixed. You can now see the expression in the term description. Thank you for the request, Stefan!

     

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