Arrate Sevilla Mambrilla posted a comment on discussion Help

Hello, I am trying to make mrsFast v3.3.0 on Ubuntu, but I get an error message. This is the code I have used: git clone https://github.com/sfu-compbio/mrsfast cd mrsfast git checkout v3.3.0 make And I get a list of warnings: cc -fno-pic -DMRSFAST_VERSION=\""3.3.0"\" -DBUILD_DATE=\""Tue Nov 21 04:55:59 MST 2017"\" -DSSE4=1 -msse4.2 -O2 -c -o baseFAST.o baseFAST.c cc -fno-pic -DMRSFAST_VERSION=\""3.3.0"\" -DBUILD_DATE=\""Tue Nov 21 04:55:59 MST 2017"\" -DSSE4=1 -msse4.2 -O2 -c -o Sort.o Sort.c cc...

cristina tejera posted a comment on discussion Help

Hi Dewi, I have the same problem as you. Did you get resolve it? Thanks!

Sri Dewi posted a comment on discussion Help

Hello, i try to run this command and always got the same error. Any suggestion? ./mrsfast...

Can Alkan posted a comment on discussion Help

yes, that is correct. Still, 35% mapping to repeatmasked genome is normal. The other...

Michele Mehaffey posted a comment on discussion Help

I used the repeat masked genome because this data is being analyzed for CNVs and...

Michele Mehaffey posted a comment on discussion Help

Great, Thank you for this information. Cheers, Michele From: Can Alkan calkan@users.sf.net...

Can Alkan posted a comment on discussion Help

Hi Michele In your previous email you seem to map to repeatmasked reference. If you...

<REDACTED> posted a comment on discussion Help

HI Michele, Can you send the email to Can Alkan(calkan@gmail.com). Thanks, Farha...

Michele Mehaffey posted a comment on discussion Help

Hello, I'm aligning WGS data from a HiSeq and getting very low percent mapping, like...

hurfdurf posted a comment on discussion Open Discussion

Feature request -- how difficult would it be to adapt mrsFAST to allow differing...

micro-read Fast Alignment Search Tool released /mrfast/mrfast-2.6.1.0.tar.gz

Can Alkan modified ticket #30

uninitialized use of ret variable in Output.c

Can Alkan posted a comment on ticket #30

fixed in 2.6.1.0

Can Alkan posted a comment on ticket #30

Thanks Peter. These are not real bugs though. We'll fix them in the upcoming 3.0...

Can Alkan modified ticket #14

mrsfast: malloc(): memory corruption

Can Alkan modified ticket #24

Invalid SAM for alignment at end of reference

Peter posted a comment on ticket #24

Problem persists in the latest release, mrFAST v2.6.0.2, although now the SAM output...

Peter created ticket #30

uninitialized use of ret variable in Output.c

micro-read Fast Alignment Search Tool released /mrfast/mrfast-2.6.0.2.tar.gz

Iman Sarrafi posted a comment on ticket #29

Hi Fritjof, Yes you definitely get a better running time by increasing the memory...

Faraz Hach modified ticket #29

mrsfast-ultra 3.3.1: --mem option & performance

Faraz Hach modified ticket #29

mrsfast-ultra 3.3.1: --mem option & performance

Faraz Hach posted a comment on ticket #29

Thanks. We are investigating this issue.

Fritjof created ticket #29

mrsfast-ultra 3.3.1: --mem option & performance

Faraz Hach modified ticket #28

Error running mrsfast-ultra

Faraz Hach posted a comment on ticket #28

Please try version 3.3.1

viktor posted a comment on ticket #28

Hi Faraz Thanks for the reply. 1) Yes, I checked it I have enough space ( more 3...

Faraz Hach modified ticket #28

Error running mrsfast-ultra

Faraz Hach posted a comment on ticket #28

Hi Vikto, Thanks for your interest in mrsFAST-ultra. I will be needing a bit more...

viktor created ticket #28

Error running mrsfast-ultra