relWarps: adapt to new Matrix version.
deformGrid*, lineplot: make adaptions needed for VILDS
deformGrid*: add deformed knots as output.
Updated README: added system deps for Linux.
read.fcsv: small improvements on unnamed lms
read.fcsv: name unnamed fiducials using the scheme "Unnamed-Rownumber"
read.fcsv: only add fiducial names if all landmarks are named.
computeArea: replace rgeos functions with sf equivalents
NEW: computeArea
restoreShapes: fixed example
CVA, permudist, permuvec: fixed p-value computation
replace long (deprecated) with length (#30)
meshDist: fixed warning regarding heatmap reference image
pls2B: fixed CV and permutest for univariate cases.
restoreShapes: fix passing origspace for multiple configs
restoreShapes: correctly implement origsize option
restoreShapes: add option meanlogCS / procSym add meanlogCS as output in case sizeshape=TRUE
restoreShapes: add option origsize.
restoreShapes: add option sizeshape
pls2B: add RV-coefficient in print method.
readallTPS: add scale to allow scaling by included scale factor.
computeRV: speed up routine
ProcGPA: execute pcAlign before the weighted centering.
ProcGPA: fix initial mshape centering if pcAlign=FALSE
meshDist.matrix: fix coloring of displacment vectors
pls2B: updated docu
Fix displacement vectors (#29)
procSym/align2procSym: support use.lm option in align2procSym
bindArr: add option collapse for cases where a matrix is obtained.
Added ... to pass arguments to ProcGPA if same.config=T
getSides: add option to add arguments for mirror
Merge branch 'master' of github.com:zarquon42b/Morpho
getSides: set default values for pcAlign and icpiter
getSides: more docu
deprecated: showPC
mirror: added option to mirror on plane, using it as a wrapper for mirror2plane.
fixed arguments in deprecated function showPC
mirror: add example for mirroring on plane
groupPCA: remove misleading combinedVar table from output
NEW: getPointAlongOutline and resampleCurve
ADD: add smooth option to resampleCurve.
procSym: Add numbering to PC-Variance table.
meshDist: added option titleplot for customizing heatmap axis.
read.slicerjson: add option to specify na values.
resampleCurve: fixed some bugs related to smoothing
rotonto: return correctly dimensioned matrices in NA cases.
resampleCurve: new option smoothn
resampleCurve: make sure bezier curve is not NaN
rot.proc: made rot.proc a wrapper for rotonto to reduce ci
ProcGPA: minor code change (leaner)
deformGrid2d: added option lty
Merge pull request #24 from dmurdoch/cxx11
Declare C++11 standard
bumped version to 2.9
Updated documentation for CRAN release
rmVertex: add support for tmesh3d
meshDist: fixed correct rendering in render.meshDist
Updated NEWS.Rd
groupPCA: simplified docu
getPLSCommonShape: fixed common sd calculation in example
classify: made classes vector to generate correct
new function getPCscores
read.fcsv: added option to specify NA values
rotmesh.onto: allow passing more parameters to rotonto
rotmesh.onto: allow passing more parameters to rotonto
alignment functions: fixed centering using a weighted mean and allowed to specify a vector
symmetrize: disallow reflections
symmetrize: disallow reflections
computeTransform: removed superfluous bracket
GetPhi (retrodeform): set h to average between landmark distance (not the squared distance)
plsCoVarCommonShape and getPLSCommonShape: added proper docu and examples
Merge branch 'pls-common-shape-var'
GetPhi (retrodeform): set h to average between landmark distance (not the squared distance)
plsCoVarCommonShape and getPLSCommonShape: added proper docu and examples
Merge branch 'pls-common-shape-var'
changed mesh2ply to allow writing to R connections
Merge pull request #8 from nevrome/master
deformGrid3d: add gridcol and gridwidth
applyTransform: made generic function more general (fixes #9)
deformGrid3d: fixed indices starting with 0 for slices
rotonto/ComputeTransform: allow singular results
fixLMtps: set reflection to FALSE
fixLMmirror: now allowing heavy abuse with loads of missing data and improved error handling
NEW: scanMeshFromViewpoints
renamed: scanMeshFromViewpoints to virtualMeshScan
virtualMeshScan: fixed example
Merge branch 'master' into virtual-mesh-scan
NEW: getOuterViewpoints
virtualMeshScan: added visible and invisible parts to output.
virtualMeshScan: fixed offset to follow faux normals in direction of viewpoints.
Merge branch 'master' into virtual-mesh-scan
getVisibleVertices: fixed typo
updated docu for virtual-mesh-scan
line2plane: fixed deprectated array multiplication warning
Merge branch 'virtual-mesh-scan'
pls2B: added CV (+ options)
checkLM: added possibility to view backwards
virtualMeshScan: made it parallel for win too
pls2B: added CV (+ options)
replaced some instances of "cat" with "message"