#158 Could not load SBML model

[dilawars]

Attached SBML model is created using python-libsbml. This could be loaded into MOOSE using moose.loadSBML(model_file_path, '/model') command:

~~~~~
File "./smolen_baxter_bryne.py", line 29, in setupModel
moose.readSBML(sbml_file, '/model')
IOError: could not load model
~~~~~~

Since this file is created using libsbml, this should be flawless and should load into MOOSE.

[dilawars]

Attached an empty SBML file. Adding an non-empty sbml file. There seems to be some problem with level 3 defaults values.

[dilawars]

Attached model passes the SBML schema for Level3 but still fails to load with MOOSE.

Invalid SBML: Either initialConcentration or initialAmount must be set or it should be found in assignmentRule but non happening for 
./run.sh: line 2:  6706 Segmentation fault      python ./smolen_baxter_bryne.py ./smolen_baxter_bryne.dot

Probably Level3 specifications are not implemented in MOOSE yet?

[Anonymous]

First provide a valid sbml model to test.

As per your own error msg itself.
"Either initialConcentration or initialAmount must be set or it should be found in assignmentRule but non happening for"

<species id="user-content-CAMKII" compartment="comp_CAMKII">
<species id="user-content-CAMKK" compartment="comp_CAMKII"></species></species>

For these species there is no 'conc' or 'amount' is set nor a way to compute the values??

Its not a valid model

harsha