Hello, I generated a PCA with Mev and I want to make some changes to the PCA. I want to change the size of the labels and the size of the axis legend, but I am not able to do this with the display function. Also, the function "store in cluster" is inactivated. Any suggestions please?
Hello, I generate a PCA of my metabolomic data with Mev and I cannot change the size of axes legends (numbers) and the size of the name of the samples, when I export the figure as an image, the size of the samples is too small. Also, I cannot store the samples in clusters with this software version. Any suggestions please? Sincerely, Dorra.
I experince the same problem. Any solution?
Solved???
Solved?
Hello, I was trying to recreate the results of hierarchical clustering in R, however, my clustering results in R are different from those I have got via MeV ( Mev giving better results). In order to understand what is happening in every step, I wanted to recreate the plots in R. I was wondering if anyone could help me understand how are the trees created when we choose both options of sample tree and gene tree while building the trees in the first step of MeV, also I read in the documentation that...
is there another link? this does not open anymore, and I am experience the same problem i windows
Same here: Can't open MeV after OS update to Catalina (macOS 10.15.1)
Hi I updated my mac to catalina. I would like to know if there is any update to run Mev as the old version is not working any more !!
Hi, I am trying to run SAM analysis on timecourse data (5 repeated samples taken from individuals in 2 independant groups) e.g. Subject 1, group A, time point 1 Subject 1, group A, time point 2 Subject 1, group A, time point 3 Subject 1, group A, time point 4 Subject 1, group A, time point 5 Subject 2, gorup B, time point 1 Subject 2, gorup B, time point 2 Subject 2, gorup B, time point 3 Subject 2, gorup B, time point 4 Subject 2, gorup B, time point 5 . . . 1) In the SAM analysis window, when selecting...
In Windows 10 there doesn't seem to be any solution, which is too bad. MEV can be used for so many things. A 3D PCA plot of my RNAseq data would be very cool. I tried putting the Java3D 1.5.2 files in every folder of my Java Install (jdk1.8.0_162) but no joy. Even though the software picks up that Java3D is installed. Maybe if I took the Java 3D out of the path?
I have run t-tests between groups using p-value threshold of 0.01, adjusted Bonferroni correction, 1000 permutations and Welch approximation. When I look at the p-values for significant genes, both raw and adjusted p-values are 0 for all significant genes. What does this mean and how do I get the p-values ? Thanks
I am using MeV 4.8.1 in Linux. If i make a gene distance matrix with a large number of genes (~20,000), the names of the genes overlap and are all jumbled... It seems to only be a probelm with a large number of genes. Of three linux computers, it happens on 2 of 3 of them. The interactive GDM is a really great feature of MeV and I would be at a loss with out it. I don't know what other information i could give to be more helpful. Has Anyone else seen this problem, or is it just me?
Hi there, Every time I load MeV and try to load new data a pop up shows that MeV...
You can search it "java.lang.ArrayIndexOutOfBoundsException"on Google,it is an usual...
Dear Mev Users today I run a cluster analysis with a small number of genes (2000)...
Hi, Out of five annotation columns for the data type, 'tracking id', 'locus' and...
Hi! I work with RNA-seq data and would like to know what is the program you use to...
I'm comparing a bunch of arrays: 4 biological replicates (2 male, 2 female), 5 drug...
Hi, I am trying to perform hierarchical clustering of an extremely high number of...
Good morning, I am trying to use MeV's utilities edgeR and DeSeq in order to analyze...
Good morning! I am a new user of MeV and I need some help to figure out an issue...
Hello! I am new on this forum and on MeV :) I am trying to run a PCA but every time...
Hi, I've been doing some clustering and have noticed that for every tree (and the...
Hi, I've been doing some clustering and have noticed that for every tree (and the...
MeV 4.8 was developed against R version 2.11, although anything prior 3.0 tends to...
Hi Everyone, I'm a graduate student working with a large transcriptomic dataset and...
It seems that there is a problem with libjri.so and JRI.jar. But I have install java...
Hello, The installation under Linux 14.10 is good. In a first time I can start application...
Mac version of MeV 4.9 has been mentioned -- but never delivered. The 4.8 versions...
Hi everybody, is there any other place where I can download Express Converter 2.1...
They are ignored. On 12/17/2014 11:47 AM, Andrew Rahmberg wrote: How does MeV handle...
How does MeV handle blank or NaN values when generating PCA or performing clustering?...
I have been experiencing similar problem - I have a 16Gb RAM in my desktop but I...
Hi, The order seems not to affect the "Original data". But, in Original Data / Sample...
May be more information about your setup will help. Java 32bits or 64bits? Oracle...
My solution is not perfect, but works. I unzipped the archive of Java3D and put the...
The Web links seem to be broken. The documentation is in the documentation folder...
The documentation is in the documentation folder of the ZIP file file you downloaded....
I should have RTFM. OK, I will dive ;-)
Hi, I am not using any annotation but I got the same warning. It looks like the DNA...
the MeV manual
Thanks a lot. Any documentation about it?
Hi, I am having this issue as well and I have seen quite a few other people having...
When I try to load my data, I keep getting the following error and in the file loader,...
Hi, I am tring to perform hierarchical clustering on a very high number of features....
Dear Sir/Madam I am currently using the MeV software to analyze my microarray data....
Right click on the 3D view line on the tree to the right, then choose options, and...
I am currently using the MeV software to analyze my microarray data. Some of the...
Hi, The dots in the 3D view of PCA results are very small. In the publication of...
Hello! I'm (a bachelor student) quite new to Mev and I would like to preform a k-means...
I have the same problem but with JAVA SE 8.25 and JAVA 3D 1.2.1 openGL instead.
The documentation is in the documentation folder of the ZIP file file you downloaded....
Hello, I am using a Linux machine to run MeV and I am trying to sort my samples in...
Hi John, the guick start is back online but the link to full manual is still broken.....
I've been experiencing the same problem. Can anyone help us? Best!
Hi! When I opened the MeV Manual to download the manual describing the workings of...
Hi! When I opened the MeV Manual to download the manual describing the workings of...
In setting up whole (or partial) RNAseq (transcriptomic) experiments for analysis...
Hi, I did an HCL then I clicked on nodes and defined different clusters (color+label...
Hi, I already have such a problem. In my case the FTP is not reachable (too strong...
Hi, I still can get the latest version of the manuals. Is there another place where...
Hello, I just downloaded the latest Linux version (4.8.1) and I suffer multiple problems:...
Thanks, but they are still broken... does anyone have them?
Hi, I still can get the latest version of the manuals. Is there another place where...
Hi, I got a similar error, when I tried EdgeR analysis for the test sample dataset....
Hi, I have been trying to run MeV 4.8.1 for RNAseq analysis. I tried the TagSeqExample.txt...
Thank you!
Thanks for letting us know. We'll look into it and should have them back up soon....
Hi, All links for manual (both quick start guide and full manual) downloads are broken....
Hi I'm new to MeV. I downloaded Mev 4.9.0 today. It opens OK, but when I go to File,...
I am having the same problem with MeV 4.8.1 in Mac OSX. Have used for some time but...
I am using Mac OS 10.7.5 Mev version 4.8.1 JAVA 7u65. 8GB memory installed. I read...
We're trying to get MeV's 3d visualization working, but it doesn't look like it's...
Hi, I have used MeV intermittently in Mac OSX for some time, but for some reason...
Hi, i use mev inubuntu 12.04 and have the same problem, do you have a fix for the...
Dear User, I tried to create SOM using microarray expression dataset in MeV. I have...
I can't perform the edgeR analysis for RNA-Seq. At last, is showed "Analysis Error"....
Thanks Lev. Sent from my iPhone On Apr 21, 2014, at 10:14 AM, "levk" levk80@users.sf.net...
I held off on releasing 4.9 for Linux and Mac because Java 7 was not released yet...
I held off on releasing 4.9 for Linux and Mac because Java 7 was not released yet...
So as strangely as MeV stopped working for a couple of days, it is working just fine...
Thanks! And, for the record, I agree with jesse - MeV is really superb. I too have...
Thanks as well for the report. We will try to sort out what is the source of the...
Thanks for reporting this. We will look into it. JQ
I have been having the same problem as of April 14th, using V4.8.1 in Ubuntu 12.04...
I've been a loyal MeV user for almost seven years, but as of today, it has stopped...
I've been a loyal MeV user for almost seven years, but as of today, it has stopped...
Just wanted to bump this post again to see if anyone else has encountered this issue...
Hi, In my experience, the EWEIGHT line is not taken into account when clustering...
Hi Please any idea/suggestions about this problem: java.lang.ClassCastException:...
Should be fixed now, sorry for the delay.
Still getting this error almost five months later. Have a workshop coming up and...
Thank you a lot for the fast answer! Especially for the according publication. Even...
A dendrogram from a hierarchical clustering analysis by default has an arbitrary...
Hej everybody, I'm new in this forum & also quite a beginner in using the program...