Activity for [DEPRECATED] Gene Ontology
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Marion Gremse created ticket #11830
acrosome
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basal body, basal granule, kinetosome
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Emily Bowler-Barnett created ticket #11828
New term request - Subcortical maternal complex
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sperm surface as a new term request to cellular component
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gerontoplast stroma as cellular component?
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Paola Roncaglia modified ticket #1332
KW2GO mapping for archaeal-type flagellum
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Melanie Courtot posted a comment on ticket #1332
Hi Elisabeth, I updated the mapping from KW-0974 archae flagellum to GO:0097589,...
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Elisabeth Gasteiger created ticket #1332
KW2GO mapping for archaeal-type flagellum
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Hi Marion, I'm afraid this tracker is no longer in use (and Midori is no longer with...
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epididymosome
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Antonia Lock posted a comment on ticket #1331
oops thanks
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Hi Antonia, Would you mind moving (copying) this ticket over to the annotation tracker...
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UniProtKB:P15442, UniProtKB:P33892
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Ingrid posted a comment on ticket #1330
Hi Paola, Thanks for the reminder. Habits are hard to break, even (or especially)...
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Hi Ingrid, Just a friendly reminder that we have moved the GO annotation issue tracker...
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Hsin-Yu Chang modified ticket #1330
IPR013263 mapping to GO:0003918
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Hell Ingrid, Thank you for this. I have changed this GO term into GO:0003917 DNA...
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IPR013263 mapping to GO:0003918
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Valerie Wood posted a comment on ticket #7102
wrong tracker! I'll post on github
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Phew we are back onto this . Antonia has been looking at it again. I now think the...
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Amanda Mackie created ticket #11824
NTR metal-phosphate:proton symport
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Chris Mungall posted a comment on ticket #68
Please note the paint tracker has moved to github https://github.com/geneontology/paint/issues...
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I think PCNA is present in archaea and not in prokaryotes There are a couple of 'bacterial'...
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Pascale Gaudet posted a comment on ticket #68
Hi Ingrid, Yes I'd move it to the other tracker (well the new tracker - https://github.com/geneontology/go-ontology/issues...
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Hi Pascale, Right, I did not read the definition carefully; I was in a hurry, and...
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PTN000186208 mapping to GO:0005663
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Ingrid, I am surprised that you think the taxon constraints should have caught this,...
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PTN000007197 mapping to GO:0043231
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Hi Ingrid, I fixed the family. Next time can you give the the accession of the protein...
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request taxon constraint for lung alveolus development
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This tracker is closed. Please use: https://github.com/geneontology/go-ontology/...
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Michael E Rice created ticket #11823
request taxon constraint for lung alveolus development
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David Osumi-Sutherland posted a comment on ticket #11821
Manually transferred to GitHub https://github.com/geneontology/go-ontology/issue...
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Birgit Meldal posted a comment on ticket #11816
The variation to the role in the cell cycle adds indeed a further complication. It's...
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In this case do we need some rules how to name the organism specific variants? For...
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Copied to GH.
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Hi Birgit, We've moved to Github (announcement should go out later today). Can you...
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mappings for IPR003725, IPR005116
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Hello Ingrid, Thank you for the e-mail. These two entries are domain entries. These...
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Or we create the specific complexes in the complex portal as children of the generic...
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Hi Jane, How does it differ from GO:0022848 acetylcholine-gated cation channel activity?...
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David Hill modified ticket #11769
axon vs. nerve fiber
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Done.
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Autophagy
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Hi Marc, Go ahead and assign the autophagy terms directly to me. I will add these...
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MP GO:0009927 histidine phosphotransfer kinase activity
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Nancy Campbell posted a comment on ticket #11818
more recent review PMID 24860421 (figure 1) thanks.
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ntr: regulation of protein localization to cell division site involved in cell separation after cytokinesis
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Hi David, Me again! please let me know if I should add this as a new ticket. I have...
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Marc Feuermann created ticket #11820
Autophagy
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refinement of septin ring structures
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missing links and relationships in the BDNF-TRKB receptor signalling pathway and parent
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I agree. -D
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refinement of septin ring structures
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refinement of septin ring structures
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missing links and relationships in the BDNF-TRKB receptor signalling pathway and parent
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I think 'nerve fiber' would be better as a synonym for the more general term 'neuron...
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Tanya Berardini posted a comment on ticket #11805
Hi David, Thanks very much for the input. I think that you are right! I think I will...
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At the cell cycle meeting the transition was modelled included some of these events...
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Yep. Just add in TG. Let me know if any problems. Cheers, David
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S'okay, I just read. I can now add in term genie?
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Hi David, I am after "ER tubular network membrane organization" http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0098826...
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Looks legit - we have plenty of NT receptor activities defined like this (e.g. see...
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Hi Jane! I'm going to assign this to DOS for comment because he is working on synaptic...
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NTR: nicotinic acetylcholine receptor activity
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Hi Tanya, It seems to me that this should be related (narrow synonym?) to walking...
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APC complexed with inhibitor
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Assigning to Tanya.
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protein acetyltransferase activity grouping term
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Jane Lomax created ticket #11817
NTR: nicotinic acetylcholine receptor activity
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MP regulation of cyclin-dependent protein serine/threonine pk activity involved in.....
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Hi Val, From what is there now, the regulation of the CDK is a part of the transition...
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Definition of GO:0072655 establishment of protein localization to mitochondrion?
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For now I will change the def as suggested above. I think movement is correct in...
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BP for glo3
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OK. I finished cleaning up what we had. When the time comes to add the remaining...
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APC complexed with inhibitor
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force e-mail...
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I also thought that only the transport defs used the phrase 'directed movement'
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protein acetyltransferase activity grouping term
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Thanks for the quick reply!
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Hi Antonia, After conferring with Tanya, I have decided to go with option 2. I have...
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Hi Antonia, It seems that there are a lot of annotations to the current pathway that...
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test
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MP regulation of cyclin-dependent protein serine/threonine pk activity involved in.....
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NTR- phosphatidylinositol-5-phosphate biosynthetic process
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Definition of GO:0072655 establishment of protein localization to mitochondrion?
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BP for glo3
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difference between inflammasome and pyroptosome?
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Paul Denny posted a comment on ticket #11812
Dear David, I like your revised def. "The directed movement of a protein to the mitochondrion...
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Hi Paul, If you look at the children of this term, some of them specify where in...
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OK - thanks, David
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NTR- phosphatidylinositol-5-phosphate biosynthetic process
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protein localization and transport ontology relationship problem(s)?
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Shouldn't this be the opposite way around, with "establishment of localization" being...
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Definition of GO:0072655 establishment of protein localization to mitochondrion?
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protein localization and transport ontology relationship problem(s)?
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eg PMID:24758716 note to self 134ecf3bebd24e1a
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BP for glo3
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