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#1 Crashes during very simple run!!!

open
nobody
None
5
2012-03-01
2012-03-01
Anonymous
No

I get the following error messages when running some 2500 bp with -n 100 and -l 50

I get the following output

./GemReads.py -r /Users/rm274/Documents/area51/ERCC-00180-ReverseIsoform1.fasta -n 200 -l 100 -m /Users/rm274/Documents/area51/GemSIM_v1.4/models/ill100v5_s.gzip -q 64 -o /Users/rm274/Documents/area51/ERCC-00180-test
Traceback (most recent call last):
File "./GemReads.py", line 700, in <module>
main(sys.argv[1:])
File "./GemReads.py", line 657, in main
read1,pos,dir,quals1=readGen1(ref,cRef,refLen,readLen,gens,readLen,mx1,insDict,delDict,gQList,bQList,iQList,qual,circular)
File "./GemReads.py", line 152, in readGen1
read,quals=mkErrors(read,readLen,mx1,insD1,delD1,gQ,bQ,iQ,qual)
File "./GemReads.py", line 413, in mkErrors
d5=inds[after]
KeyError: 'c'

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