Activity for clovr
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Shaun Adkins committed [r2321]
adding Term-ProgressBar to CPAN list
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clovr released /images/clovr-standard-2017-03-03-23-18-44_vmdk.tgz
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commiting template param addition
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fixing parameter name
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addition of snp2vcf step in mugsy_callsnps comp...
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fixed a tag in config param
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convert spaces into tabs in tag_data section
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fixing Microbe Panel to ignore accession file o...
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fixed SPAdes pipeline output tag
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fixed SPAdes pipeline output tag
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fixed SPAdes pipeline output tag
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fixes to pseudomolecule spades template
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some cleaning up of the config templates
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changed temp location for QIIME work
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fixing some filenames
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Added SPAdes hudson tests
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edits to pipeline template
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changing spades annotation to use pseudomolecules
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fixing bug with redundant config params in anno...
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improved conditions for annotation and assembly...
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upgraded spades assembler to 3.7.1 again
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downgrading Spades due to issues in pipeline co...
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Adding SPAdes assembly pipeline and modifying M...
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fixing clean_fasta component config for spades ...
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initial commit of SPAdes assembly for Clovr Mic...
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updating qiime custom params
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reverting some scripts back since I accidentall...
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changing dataset in hudson job for CloVR Microb...
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updating translate_sequence configs to work wit...
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restricting Tests view filter to only current t...
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Kemi Abolude committed [r2292]
fixed clovr_huamann2 pipeline
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Fixed some testing params, but scp-ing files ov...
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update to metaphlan2
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updates to clovr_humann2.config.tmpl
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make HUMAnN2 pipeline visible on dashboard
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Adding clovr_humann2 pipeline
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adding additional tests
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adding additional tests
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updating ec2 tools to later version
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Adding Diamond to opt-packages
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Adding MinPath to opt-packages
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adding MetaPhlAn2 to opt-packages
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Adding Bowtie2 to opt-packages
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fixing filtered keys param for uchine_calc_cpu_...
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more fixes with 16S MiSeq pipeline
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Pipeline template changes for 16S Miseq pipeline
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fixing config files to match up to component co...
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fixed typo in 16s pipeline_tmpl.config files
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Adding prinseq-lite to opt-packages
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removed barcode-related metadata tag
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Adding seqtk and fastx-toolkit to CloVR
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adjusting input directory paths
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changed de-novo OTU picking to open-reference O...
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adjusting pipelines to handle the changed versi...
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making changes to add MiSeq functionality to 16...
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rewrote mysqldump command
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Sonia Agrawal committed [r2266]
Added default manatee database name to annotati...
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Renamed pipelines on clovr dashboard
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Added display name to pipelines
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Cesar Arze committed [r2263]
Stripping out whitespace from urls to prevent a...
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Fixed bsml2fasta missing key
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Fixed template configs for missing keys
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Added help button to dashboard
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Added chado components to clovr-microbe
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Corrected path for greengenes in qiime config
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Added compiled files to updated qiime
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updated qiime_config with greengenes path
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deleted greengenes from qiime-1.8
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Added new version of qiime
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Adding greengenes phantom tag download
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Updated CloVR-16S pipeline as qiime is updated
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Removed hard-coded limit in histogram
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Fixed bug in FTP details display
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Added parameterized value that was missing from...
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Updating Metagenomics tests to use fixed map file
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changed test description
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Fixed typo in Test001 config /mnt/user_data path
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Fixing sybil test to name database uniquely for...
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changed dataset for Test001
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More small fixes to tests
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More updates to make use of temp directory to s...
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Small changes to where testing datasets are dow...
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Small bug fix; exiting before deleting data dir...
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Updating tests to make use of real-world data f...
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adjusted tests to use wget to grab remote files
