Developer_Guide

Development Instructions

0. Install Eclipse

1. Install Hadoop

  Download hadoop 0.17.0.tar.gz
  Extract to hadoop-0.17.0

2. Check out CloudBurst from svn

  svn co https://cloudburst-bio.svn.sourceforge.net/svnroot/cloudburst-bio cloudburst-bio

3. Configure Eclipse

3a. In Eclipse Project Properies, add External Libraries:

   hadoop-0.17.0/hadoop-core-0.17.0-core.jar
   hadoop-0.17.0/lib/*.jar

3b. In "Open Run Dialog", set VM arguments

   -Xmx512M

4. Run on sample data.

  Edit CloudCurst/src/CloudBurst.java to set data=1 with local data