Rbeinart posted a comment on discussion Help

Hello, I have a question about the output files. I’m trying to use Abacas to order contigs against a reference genome. If I look at the .crunch file, it looks like my first scaffold aligns to position 32399 in my reference genome. Yet when I look at the pseudomolecule fasta file, it doesn’t begin with 32399 N’s. It begins with my first scaffold sequence. I’d like to use the ordered contigs as input for Mauve and/or BRIG. I’ve gotten kind of odd results uploading the pseudomolecule WITH N's output...

Cecili Mendes created ticket #2

Error runing ABACAS

ABACAS released /OldFiles/abacas.1.02.pl