scArches

Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.

Features

Annotating a single-cell dataset using a reference atlas
Identify novel cell states present in your data by mapping to an atlas
Multimodal single-cell atlases
Data integration/batch correction
Spatial transcriptomics
Querying gene programs in single-cell atlases

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License

BSD License

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Additional Project Details

Programming Language

Python

Related Categories

Python Data Integration Tool

Registered

2023-06-12

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