Download
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.
Features
- Annotating a single-cell dataset using a reference atlas
- Identify novel cell states present in your data by mapping to an atlas
- Multimodal single-cell atlases
- Data integration/batch correction
- Spatial transcriptomics
- Querying gene programs in single-cell atlases
Project Samples
Categories
Data IntegrationLicense
BSD LicenseFollow scArches
Other Useful Business Software
Easily Host LLMs and Web Apps on Cloud Run
Run frontend and backend services, batch jobs, host LLMs, and queue processing workloads without the need to manage infrastructure. Cloud Run gives you on-demand GPU access for hosting LLMs and running real-time AI—with 5-second cold starts and automatic scale-to-zero so you only pay for actual usage. New customers get $300 in free credit to start.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of scArches!
