Open Source JavaScript Scientific/Engineering Software for Mac

Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).

**Unfortunately, the Bridge Contest is no longer operational. We hope the code base will be of use to others with similar projects in mind.** A national virtual bridge engineering contest with prizes for middle and high school kids, grades 6 to 12, but anyone can enter for fun. Based on the award-wining Bridge Designer client software, now open source through this project. Web site infrastructure supports worldwide participation in qualifying and semifinal rounds with a tiny administrative staff. The new Rails back end is a RubyMine project. Thanks to JetBrains for this mega development environment!

JSmol is the extension of the Java-based molecular visualization applet Jmol (jmol.sourceforge.net) as an HTML5 JavaScript-only web app. It can be used in conjunction with the Java applet to provide an alternative to Java when the platform does not support that (iPhone/iPad) or does not support applets (Android). Used in conjunction with the Jmol JavaScript Object (http://wiki.jmol.org/index.php/Jmol_Javascript_Object), JSmol seamlessly offers alternatives to Java on these non-Applet platforms. JSmol can read all the files that Jmol reads. You can do all the scripting that Jmol does. You can create all the buttons and links and such that you are used to creating for Jmol. All of the rendering capability of the Jmol applet is there. JSmol has both a console and a popup menu. JSmol is integrated fully with JSME and JSpecView. A "lite" version of JSmol provides minimal functionality (balls and sticks only) for extremely small-bandwith apps. Released 1/12/2013

Software for teaching and learning mathematical proofs Where most mathematical proof software concentrates on formal logic (or some other specialty area of mathematics), Lurch aims to be truly general-purpose, with an attracitve user interface.

!!! New website is https://unity.mol3d.tech and new releases/source code are now on Github : https://github.com/LBT-CNRS/UnityMol-Releases !!!! Implementation of a visualization prototype for molecular structures and networks using the Unity3D game engine. Implementation of numerous graphical methods as spheres, particle systems, bond, etc.. as well as our recent HyperBalls methodology (see: www.hyperballs.sf.net).

MathJax is a modular javascript framework for including mathematics in web pages. It can take input in various formats, like TeX and MathML, and can produce output in various forms, such as MathML or HTML-with-CSS. Components are loaded as needed.

YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.

SITools2 is a new CNES generic tool performed by a joint effort between CNES and scientific laboratories. The aim of SITools is to provide a self-manageable data access layer deployed on already existing scientific laboratory databases.

The application Dictionary System (DS) is a web application designed for creation of one-way bilingual dictionaries or encyclopaedias offering a working environment for creation of a dictionary and a web page which enables the general public to search in the dictionary. It is so-called DWS application (Dictionary Writing System) or DPS (Dictionary Production / Publishing System). Aplikace Dictionary System (dále DS) je webová aplikace. Je to tzv. DWS aplikace (Dictionary Writing System) nebo také tvz. DPS (Dictionary Production/Publishing System). Aplikace Dictionary System nabízí pracovní prostředí pro tvorbu jednosměrných dvojjazyčných slovníků nebo encyklopedií a webové stránky, které umožňují vyhledávat ve slovníku široké veřejnosti.

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

O SimuFísica é uma coleção de aplicativos de simulação de vários fenômenos da Física e de áreas afins.

Simulate 2D physics with my engine entirely made in JavaScript. Modify live existing scenarii or create your own from scratch with the live editor. Try it on the demo web site! :) Note : If you intend to download and use the sources as it is, you need to host it as scenario resquests are made in AJAX.

Algebra Helper shows how signs change when moving a quantity from one side of an equation to the other. Algebra Helper is implemented in JavaScript.

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.

Connecting Historical Authorities with Links, Contexts and Entities. CHALICE is a historic placename gazetteer for the UK, published as Linked Data and linked to other widely-used sources of placename reference information on the semantic web.

ChemLearing is a lightweight, easy to use e-learning platform - for both the student as well as the teacher.

Ciclope Planetarium is a web-based planetarium that provides a simulation of the sky from any location at any time and date. Developed using Google Maps API & AJAX. Available in PHP & J2EE. Integrated in the Ciclope Stars project (www.ciclope.info/stars)

ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.

The Cybertory™ Virtual Molecular Biology Laboratory is an on-line virtual environment for conducting simulated experiments in molecular genetics.

The purpose of the E-Remise system will be to facilitate the proper evaluation of large numbers of electronic assignements. Another prupose of E-Remise is the archiving of source code and other work done by students. It is useful for pedagocial reasons.

Fanyi is a tool for translating words between the Chinese and English languages, right in your command line. It’s a good supportive tool for learning and reading the Chinese language from English, or the other way around. All translation data is fetched from iciba.com and fanyi.youdao.com, and with each translation comprehensive and related samples are given for better understanding and proper usage. There are translations for words as well as sentences, and in Mac/Linux bash, words can even be pronounced by the ‘say’ command.

Gamoliyas is an open source John Conway's Game of Life game totally written in DHTML (JavaScript, CSS and HTML). Uses mouse and keyboard. Very configurable. This cross-platform and cross-browser game was tested under BeOS, Linux, *BSD, Windows and other

IBIS - Interactive Biodiversity Informatics Software - is software to identify species or other taxa. Intended users range from school children or citizen scientists to ecologists or taxonomists. The identification keys can be embedded in CMS or Wiki

IMathAS is a web-based math assessment and homework system. It is a course/learning management system (CMS/LMS/VLE) and testing system featuring algorithmic questions, similar to WebWork, Webassign, and publisher systems like iLrn, MathXL, etc.