Open Source Scientific/Engineering Software - Page 2

Ngspice project aims to improve the spice3f5 circuit simulator.

Qucs is a circuit simulator with graphical user interface. The software aims to support all kinds of circuit simulation types, e.g. DC, AC, S-parameter, Transient, Noise and Harmonic Balance analysis. Pure digital simulations are also supported.

XFLR5 includes the xfoil program for foil analysis, and several 3d analysis methods for planes : - a non-linear lifting line method for standalone wings - two vortex-lattice and a 3d panel method for the analysis of aerodynamic performance of wings and plane operating at low Reynolds numbers The latest v6 version introduces stability analysis of planes.

FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then direct you to where your data may have problems and allow you to take necessary steps to correct it before doing any further analysis. FastQC is not tied to any specific type of sequencing technique, so it can be used to look at libraries of various experiment types (Genomic Sequencing, ChIP-Seq, RNA-Seq, BS-Seq etc etc).

Fast and versatile, the NumPy vectorization, indexing, and broadcasting concepts are the de-facto standards of array computing today. NumPy offers comprehensive mathematical functions, random number generators, linear algebra routines, Fourier transforms, and more. NumPy supports a wide range of hardware and computing platforms, and plays well with distributed, GPU, and sparse array libraries. The core of NumPy is well-optimized C code. Enjoy the flexibility of Python with the speed of compiled code. NumPy’s high level syntax makes it accessible and productive for programmers from any background or experience level. Distributed under a liberal BSD license, NumPy is developed and maintained publicly on GitHub by a vibrant, responsive, and diverse community. Nearly every scientist working in Python draws on the power of NumPy. NumPy brings the computational power of languages like C and Fortran to Python, a language much easier to learn and use.

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

SkyChart is a software to draw chart of the night sky for the amateur astronomer from a bunch of stars and nebulae catalogs. See main web page for full download. This software is part of a full suite for astronomical observation: https://sourceforge.net/projects/ccdciel/ https://sourceforge.net/projects/indistarter/ https://sourceforge.net/projects/eqmodgui/ Requirement: https://sourceforge.net/projects/libpasastro/ See also: https://sourceforge.net/projects/indi/

OpenFOAM - The Open Source CFD Toolbox. OpenFOAM is a generic, programmable software tool for Computational Fluid Dynamics (CFD). For more information, see: - Main Website: https://openfoam.org - C++ Source Documentation: https://cpp.openfoam.org - Issue (Bug) Tracking: https://bugs.openfoam.org - User Guide: https://cfd.direct/openfoam/user-guide

Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas

mcrypt, and the accompanying libmcrypt, are intended to be replacements for the old Unix crypt, except that they are under the GPL and support an ever-wider range of algorithms and modes.

A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.

Graphical explorer program written in C#, for browsing BACnet devices (run on Windows & Linux). Supports BACnet MS/TP, Ethernet, IPv4, IPv6, SecureConnect Basic functions for read, write, read multiple, write multiple, iam, whois, subscribeCOV, notify, WriteFile, ReadFile etc. Includes three demo server applications : a generic server, a wall mounted room controller simulator, a weather server (gets data from an Internet webservice). Includes a lot of samples C# source code. Raspberry Pi server sample code, also tested on Beaglebone & Intel Edison. Bacnet/Mstp capture tool (only Wireshark and an Rs485 adaptor are required) BACnet/SC Hub sample application. See Readme.txt for more information. Developers/Contributors team : Morten Kvistgaard (2014-2016), Frédéric Chaxel (2015-2023), Adam Guzik (2015), Christopher Günther (2015, 2019), Thamer Al-Salek (2016), Lance Tollenaar (2022-2023), Frank Schubert (2022-2023), Marco Diekmann (2023)

TinyCAD is a program for drawing electrical circuit diagrams commonly known as schematic drawings. It supports standard and custom symbol libraries. It supports PCB layout programs with several netlist formats and can also produce SPICE simulation netlists. It is also often used to draw one-line diagrams, block diagrams, and presentation drawings. The source code for TinyCAD is now on GitHub: https://github.com/matt123p/TinyCAD Online documentation can be found here: https://github.com/matt123p/TinyCAD/wiki

GPS log file viewer and analyzer with support for GPX, TCX, KML, FIT, IGC, NMEA, SLF, SML, LOC, GPI, GeoJSON and OziExplorer files.

The Grid Analysis and Display System (GrADS) is an interactive desktop tool for easy access, manipulation, and visualization of earth science data. The OpenGrADS Project seeks to develop advanced interfaces and extensions based on the main GrADS engine.

Ns is a discrete event simulator targeted at networking research. Ns provides substantial support for simulation of TCP, routing, and multicast protocols over wired and wireless (local and satellite) networks.

Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).

QModMaster is a free Qt-based implementation of a ModBus master application. A graphical user interface allows easy communication with ModBus RTU and TCP slaves. QModMaster also includes a bus monitor for examining all traffic on the bus. QModMaster is based on libmodbus <http://www.libmodbus.org/> for modbus communication and on QsLog <https://bitbucket.org/codeimproved/qslog> for logging. Supports both Windows and Linux. For Windows a pre-compiled binary is availiable. It does not require instalation, just unzip and run. You can download the latest stable version from here <https://sourceforge.net/projects/qmodmaster/files/qModMaster-Win32-exe-0.5.2-3.zip/download>. Source code is availiable for Windows and Linux for compilation using Qt <http://www.qt.io/download>. Check out my modbus slave project <http://sourceforge.net/projects/pymodslave/>. Checkout the following youtube videos : <https://www.youtube.com/channel/UC3Tk2gE-KGtwOq8WWmb2R7g>

Grafana is an open source analytics and monitoring platform designed for every database. It allows you to visualize and understand your metrics through dynamic and reusable data-driven dashboards that you can create, explore and share with others. Grafana offers a multitude of visualization options and lets you explore your metrics and logs like never before. It can also be set to alert you on your most important metrics. Thousands of companies have been using Grafana to monitor everything from infrastructure and applications, to beehives and power plants.

Gerbv is an open source Gerber file (RS-274X only) viewer. Gerbv lets you load several files on top of each other, do measurements on the displayed image, etc. Besides viewing Gerbers, you may also view Excellon drill files as well as pick-place file

Engineering, testing and debugging of serial communication. Supports RS-232/422/423/485 as well as TCP/IP Client/Server/AutoSocket, UDP/IP Client/Server/PairSocket and USB Ser/HID. Optimized for simple command sets of e.g. embedded systems.

Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.

Robocode is a programming game, where the goal is to develop a robot battle tank to battle against other tanks with Java. The robot battles are running in real-time and on-screen. The motto of Robocode is: Build the best, destroy the rest!

dcm4che is an implementation of DICOM and IHE actors in Java. Homepage: http://www.dcm4che.org, Google Group: http://groups.google.com/group/dcm4che?hl=en, Wiki: http://www.dcm4che.org/confluence, Issue Tracking: http://www.dcm4che.org/jira

Create, edit, visualize, analyze and publish geospatial information on Windows, Mac, Linux, BSD and mobile devices. For your desktop, server, in your web browser and as developer libraries. QGIS is a user-friendly open-source Geographic Information System (GIS) licensed under the GNU General Public License. QGIS is an official project of the Open Source Geospatial Foundation (OSGeo). It runs on Linux, Unix, Mac OSX, Windows and Android and supports numerous vector, raster, and database formats and functionalities. QGIS provides a continously growing number of capabilities provided by core functions and plugins. You can visualize, manage, edit, analyze data, and compose printable maps. We also collect case studies of how people all over the world use QGIS for their GIS work. You can view combinations of vector and raster data (in 2D or 3D) in different formats and projections without conversion to an internal or common format.