Open Source Windows Research Software - Page 2
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Research Software for Windows
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SigPack
SigPack - A signal processing library using Armadillo
SigPack is a C++ signal processing library using the Armadillo library as a base. The API will be familiar for those who has used IT++ and Octave/Matlab. -
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MolMarker
Java software to evaluate the results obtained by molecular markers
Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices and UPGMA or NJ dendograms. It can calculate the frequencies of null alleles in the case of genetic data as well as H (heterosigosity) and PIC (polymorphic Information Content) values. Parentage analyses gives a list of possible parent-offspring combinations, and likelihood ratio statistics corresponding to the detected combinations. For details see MolMarker Manual.pdf -
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ClooWrapperVBA
COM-wrapper of Cloo to execute OpenCL code from Excel.
The wrapper allows to execute OpenCL code on CPU and GPU devices from VBA. Sources are available under https://github.com/Excel-lent/ClooWrapperVBA -
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Mac upgraded to OSX, Lepard which do not support os9 anymore. This project is build to help DNA Strider user to get their data out and perform some basic DNA analyze function.
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High speed math parser
Expression evaluator for Delphi developers
Version 2.5 is available! The latest changes are in TFastList class. It is the secondary class intended for fast string managment. The newest TGraph component is available as well. The new ParseUtils.FindFormula method allows searching any of possible formulas within some text. Parse components are intended for Delphi developers and perform high-speed (about 10 million evaluations per second) mathematics and boolean calculations. All components are available for Delphi 6, Delphi 7, Delphi 2005, Delphi 2006, Delphi 2007, Delphi 2009, Delphi 2010, Delphi XE, Delphi XE2, Delphi XE3, Delphi XE4, Delphi XE5, Delphi XE6, Delphi XE7, Delphi XE8, Delphi 10 Seattle, Delphi 10.1 Berlin. Please note that the samples do not require components installation (however installation is possible and in case when installed you find the components on "Samples" page of the pallete). You may open the Delphi project file (*.dpr) in the sample folder and simply run it. Fully functional TGraph component -
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Multivariate Forex Calculus Robot
MQL4, MQL5, C++ Expert Advisor, Forex Calculus Robot.
Multivariate Calculus Robot is designed to analyze and work on every available Currency Pair. Calculus Robot Implements algorithms that govern their work. These algorithms detect some sort of "Waves" in the Forex Market. In Robot's Default Configuration, the Average Trade length is twelve hours. Take Profit delta is equal to the Stop Loss delta in every trade. That kind of trade operation is symmetrical, which means that if the BUY operation was a loss and then reversed it, the SELL operation with properly modified values would be profitable. When the Results of the Robot's work are to be analyzed after at least two months, it appears that the Robot switches time intervals, which is Losing Money to time intervals, which is Making Money. Those intervals appear to be a few days or even weeks in length. The standard technical analysis used on robot results can be used to detect when those intervals begin and end. When done, Robots work at runtime and can be properly modified Lot Size. -
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jMIR
Music research software
jMIR is an open-source software suite implemented in Java for use in music information retrieval (MIR) research. It can be used to study music in the form of audio recordings, symbolic encodings and lyrical transcriptions, and can also mine cultural information from the Internet. It also includes tools for managing and profiling large music collections and for checking audio for production errors. jMIR includes software for extracting features, applying machine learning algorithms, applying heuristic error error checkers, mining metadata and analyzing metadata. -
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Artifact GeoMorph Toolbox 3D 3.1
A toolbox for 3DGM shape analysis of archaeological artifacts
The Artifact Geomorph Toolbox 3D software is designed to provide the archaeologist interested in artifact shape variability with a toolbox to allow the acquisition, analysis and results exploration of homologous 3D landmark-based geometric morphometric data. As such, the toolbox contains an automated item and semi-landmarks positioning procedure and the fundamental statistical analyses and procedures to allow the processing and analysis of the data. It is designed to be easy to use and straightforward with a simple graphical user interface. Furthermore, it provides direct, quantitative and objective results to answer common archaeological research questions with regards to artifact shape variability. -
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CERCA
CERCA – Citation Extraction & Reference Checking Assistant
CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control - Meta-research and reproducibility workflows CERCA is an experimental tool. It does not replace manual verification. CERCA is a Java desktop application built with JavaFX. To run it, you need a JRE that includes JavaFX, such as Azul Zulu JRE. Developed by: Lidiany Cerqueira, PhD Computer Science Researcher -
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MSR Tools is a source code evolution analysis tool. It consists of a framework for mining software repositories and tools for metric calculation, visualization, defect prediction.
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EasyCSP
Constraint Satisfaction Problem solving library for Java
EasyCSP is an open-source Java library for Constraint Satisfaction Programming. EasyCSP offers search algorithms for both CSPs and CSOPs. EasyCSP supports CSPs to be formalized using objects or int expressions. EasyCSP on GitHub: http://github.com/cordisvictor/easycsp-lib -
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Choco is not hosted on sourceforge anymore. Please now visit http://choco-solver.org/ !
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xrayutilities
a package with useful scripts for X-ray diffraction physicists
xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More detailed description as well as documentation can be found at webpage http://xrayutilities.sourceforge.io/. Downloads for windows can be found on http://pypi.python.org/pypi/xrayutilities Development is performed on github: https://github.com/dkriegner/xrayutilities -
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Bibliograph
Open Source Online Bibliographic Data Management
Bibliograph is a powerful and intuitive open source web application for the collaborative collection, editing and publishing of bibliographic data such as a bibliographies, small library collections or shared research data. It features a modern user interface similar to a desktop application. -
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Catalogue of Life Converter
MS Access database converts the Catalogue of Life into a gedcom format
The primary driver of speciation may result from hybridization instead of the accumulation of mutations. The accumulation of mutations may instead be responsible for a "maturation" which may have real physical meaning rather than being an amorphous concept. Scientists such as Donald Williamson and Lynn Margulis have suggested similar ideas but perhaps not going as far as this project assumes. This software converted the Catalogue of Life, catalogueoflife.org, into a gedcom format. It no longer works due to the Catalogue's database format change. This present project extends the gedcom format for use in systematics or species categorization. All named taxonomic levels are assumed to have originally been individual species and the software/database outputs all species as female until hybridization events can be added manually. This tool is used to develop the data at http://genealogyoflife.com. It converted the data from 1.2 million species to over 2 million gedcom females. -
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GUAJE FUZZY
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying special attention to interpretability issues. GUAJE lets the user define expert variables and rules, but also provide supervised and fully automatic learning capabilities. Both types of knowledge, expert and induced, are integrated under the expert supervision, ensuring interpretability, simplicity and consistency of the knowledge base along the whole process. Notice that, GUAJE is is an upgraded version of the free software called KBCT (Knowledge Base Configuration Tool). -
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S-Match
S-Match is a semantic matching framework.
S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration, ontology evolution and alignment, peer-to-peer information sharing, digital libraries integration, web service composition, agent communication, and query answering on the web. S-Match is extendable to host new algorithms. -
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Damon is a Distributed AOP Middleware on top of a p2p Overlay Network. Its main aim is to offer the necessary abstractions and services to develop distributed aspects, and to provide scalability to existent or new applications transparently.
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Libro
An interactive program for statistical analysis of texts
A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade, Flesch–Kincaid grade level and Flesch Reading Ease). -
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MySQL DB Editor
MySQL Database Viewer, Editor
This program was created as an open source with the view point of providing an easy solution for research oriented end users working with databases. So, its free to use. Please note prerequisites for this program : - .Netframework 3.5 - WAMP server installed on your system ============================ ***PASSWORD - "itsfree" ============================ Please visit http://sourceforge.net/projects/va-database if, you have any problem or queries regarding how to use it. Your feedback is highly appreciated. Thank you! Publisher - Vinit Agrawal -
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SimpleElastix
Medical Image Registration Library
SimpleElastix is an extension of SimpleITK that comes with the elastix C++ image registration library. This makes state-of-the-art medical image registration really easy to do in languages like Python, Java, C# and R. -
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Wall3 - The Inquisitor (WP3) is a PHP class that parses laws of any size in microseconds and scores them for reading ease using the Flesch-Kincaid formula. It goes a step further by highlighting all loopholes found in the document. Almost web ready!
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Zettel
Zettel allows taking notes from several references and organizing them
Zettel is a program for taking notes from bibliographic references. Instead of marking the text on paper and then going crazy looking for where the copy ended up, the notes are saved in a database, linked to the reference from where they were copied. Notes can be tagged and retrieved in several ways. Zettel é um programa para fichamento de referências bibliográficas. Ao invés de marcar o texto em papel e depois enlouquecer procurando onde a cópia foi parar, as notas são guardadas numa base de dados, vinculadas à referência de onde foram copiadas. Notas podem ser marcadas com tags, e recuperadas de várias formas. -
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Discrete Prolate Spheroidal Sequence library (C++) for computing dpss's of arbitrary length, and their energy concentrations in bandwidth [-W W]. Package also includes an optional command-line interface, and Octave dynamical extension (oct-file).
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ivl
A C++ template library extending syntax towards mathematical notation
ivl is a full-header template C++98 math library with convenient yet powerful syntax. It extends classic C++ syntax towards mathematical notation while making use of the language's elements like classes, structs, operators and functions. Expression written using ivl are excessively optimized. In other words, ivl allows writing simpler and more expressive statements using math-like formulas while taking care of optimizing them. ivl features arrays, tuples and custom function-like objects with left-right overloading, function pipelining and function vectorization, automatic lazy evaluation, sub-arrays and other views of a single or multidimensional arrays, stl-compatible iterators, multidimensional iterators and multithreading. ivl includes a rich set of functions and operators, including operations for image processing. Seperate modules are also included. The module ivl-lina implements a linear algebra LAPACK wrapper. The module ivl-cv integrates OpenCV into ivl.
