Open Source Java Research Software
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Java Research Software
View 84 business solutionsBrowse free open source Java Research Software and projects below. Use the toggles on the left to filter open source Java Research Software by OS, license, language, programming language, and project status.
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Go from Data Warehouse to Data and AI platform with BigQueryBigQuery is more than a data warehouse—it's an autonomous data-to-AI platform. Use familiar SQL to train ML models, run time-series forecasts, and generate AI-powered insights with native Gemini integration. Built-in agents handle data engineering and data science workflows automatically. Get $300 in free credit, query 1 TB, and store 10 GB free monthly.
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CiteSpace
A widely used tool for visual exploration of scientific literature.
Visit the new site: https://citespace.podia.com CiteSpace generates interactive visualizations of structural and temporal patterns and trends of a scientific field. It facilitates a systematic review of a knowledge domain through an in-depth visual analytic process. It can process citation data from popular sources such as the Web of Science, Scopus, Dimensions, and the Lens. CiteSpace also supports basic visual analytic functions for datasets without citation-related information, for example, PubMed, CNKI, ProQuest Dissertations and Theses. CiteSpace reveals how a field of research has evolved, what intellectual turning points are evident along a critical path, and what topics have attracted attention. CiteSpace can be applied repeatedly so as to track the development of a field closely and extensively. The e-book How to Use CiteSpace explains the design principles and functions along with illustrative examples in more detail: https://leanpub.com/howtousecitespace -
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DSpace
Open Source "turn-key" institutional repository application
Open Source Digital Asset Management system that enables services for access, provision, stewardship and re-use of digital assets with a focus on educational and research materials For Support, please see: https://wiki.lyrasis.org/display/DSPACE/Support RELEASES: The most recent releases are now distributed via GitHub: https://github.com/DSpace/DSpace/releases MAILING LISTS: Mailing lists have all been moved to Google Groups: https://wiki.lyrasis.org/display/DSPACE/Mailing+Lists -
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Hypernomicon
Hypertext-infused philosophy personal database software
Hypernomicon is a personal productivity/database application for researchers that combines structured note-taking, mind-mapping, management of files (e.g., PDFs) and folders, and reference management into an integrated environment that organizes all of the above into semantic networks or hierarchies in terms of debates, positions, arguments, labels, terminology/concepts, and user-defined keywords by means of database relations and automatically generated hyperlinks (hence ‘Hyper’ in the name). Hypernomicon keeps track of all these things in a highly structured, thoroughly indexed and user friendly relational database, automatically generates semantic hyperlinks between all of them, and presents this information in many different forms so that you are constantly informed of ways all of your information is related that you had not realized. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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AMPdoc
Apache, MySQL, PHP package for library, archive, museum automation
AMPdoc mblazquez edition is a portable package with Apache, MySQL, PHP, and Perl which includes a selection of documentary software applications for libraries, archives, museums, publishers, conferences and documentation centers. AMPdoc mblazquez edition enables to perform workflow management duties, publication of contents, web positioning, among others. Usually, difficulty in installing and configuring of necessary applications has limited the access to technologies to information professionals. With AMP doc mblazquez edition any information professional can use different documentary software in accordance with his needs, without requiring installation. In addition, it can run on any computer running Windows. This package seeks to democratize Documentary Technologies, providing support and contributes to moving towards modernization and the update of knowledge in this area. -
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Choco is not hosted on sourceforge anymore. Please now visit http://choco-solver.org/ !
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JaCoP is a Java Constraint Programming solver. It provides a significant number of (global) constraints to facilitate efficient modeling of combinatorial problems, as well as modular design of search. Documentation is available at project Web site. Please, note that the sources from version 4.0 are only available at GitHub.
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CERCA
CERCA – Citation Extraction & Reference Checking Assistant
CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control - Meta-research and reproducibility workflows CERCA is an experimental tool. It does not replace manual verification. CERCA is a Java desktop application built with JavaFX. To run it, you need a JRE that includes JavaFX, such as Azul Zulu JRE. Developed by: Lidiany Cerqueira, PhD Computer Science Researcher -
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Docear
An Academic Literature Suite
Docear (pronounced dog-ear) is what we call an “academic literature suite”. It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology and developed by scientists from around the world, among others from OvGU, and the University of California, Berkeley. -
Run Any Workload on Compute Engine VMsCompute Engine delivers high-performance virtual machines for web apps, databases, containers, and AI workloads. Choose from general-purpose, compute-optimized, or GPU/TPU-accelerated machine types—or build custom VMs to match your exact specs. With live migration and automatic failover, your workloads stay online. New customers get $300 in free credits.
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Navmol
Molecular structure navigator for Blind and Visually Impaired people
Navmol is a software that allows people that are blind or visually impaired to navigate and edit molecular structures in a simple and intuitive way. -
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MolMarker
Java software to evaluate the results obtained by molecular markers
Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices and UPGMA or NJ dendograms. It can calculate the frequencies of null alleles in the case of genetic data as well as H (heterosigosity) and PIC (polymorphic Information Content) values. Parentage analyses gives a list of possible parent-offspring combinations, and likelihood ratio statistics corresponding to the detected combinations. For details see MolMarker Manual.pdf -
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jMIR
Music research software
jMIR is an open-source software suite implemented in Java for use in music information retrieval (MIR) research. It can be used to study music in the form of audio recordings, symbolic encodings and lyrical transcriptions, and can also mine cultural information from the Internet. It also includes tools for managing and profiling large music collections and for checking audio for production errors. jMIR includes software for extracting features, applying machine learning algorithms, applying heuristic error error checkers, mining metadata and analyzing metadata. -
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S-Match
S-Match is a semantic matching framework.
S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration, ontology evolution and alignment, peer-to-peer information sharing, digital libraries integration, web service composition, agent communication, and query answering on the web. S-Match is extendable to host new algorithms. -
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dwos
dwos is a distribute WEB-desktop OS and scientific computing platform
dwos is a distribute WEB-desktop OS. It mainly contains a WEB desktop environment, a chat-online system, a network disk system, a Scientific Computing platform(developing) and so on. It is developed by JAVA language using the JSH(JSF+Spring+Hibernate) framework. After about half year testing, now it's open source, you can download it and run on your computer, Tomcat and jetty server container are tested ok. It's developed by myself, more about me, see here: http://home.ustc.edu.cn/~chh1990/chero/chero.html -
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A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.
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KemetLF is a Java/Swing library + DEMO which defines the Look and Feel of kemet project. This library which introduces the transcription and transliteration of egyptian hieroglyphs based on the list of Gardiner's signs (middle egyptian) - Art and Cu
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This project defines the Simple API for Binary REpresentations (SABRE) for processing hierarchically structured, binary-oriented documents, comparable to the Simple API for XML (SAX). The library is e.g. used in the Java ISO Image Creator (JIIC).
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System developed by Autonomous Semantic Grid research group,SEECS,NUST H12,Islamabad,Pakistan www.seecs.edu.pk.The system is based on ProActive Grid Middleware,ProActive Scheduler,Reasoning system Participants:Dr FarooqAhmad,Dr RaihanurRasool,KamranQadir
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Este projeto visa a criação de um sistema de gerenciamento de bibliotecas via web com finalidades educacionais visando o aprendizado da utilização das melhores técnicas de programação disponíveis utilizando ferramentas open-source.
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AFE-Web
Antike Fundmünzen Europa
Cooperation project between Goethe-University and Römische-Germanische Kommission. Will bring numismatic data online and tries to link the data with existing ones. ... resulting project code is planed to be open source! -
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AMPdoc Black Sun
Apache, MySQL, PHP package for manage syndication channels feeds
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BPMN extension for Cloud computing
java project for modifying jBPM models into cloud aware models
Program based on created BPMN 2.0 Cloud extension. It reads a model *.bpmn, which was created using jBPM BPMN 2.0 modeling tool. Then user is able to define a sensitivity of data elements. After that an Ontology is created and filled in with model elements. Special logical rules process the data. User is able to additionally define the security level. The resulting model is created and can be opened in the jBPM. -
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Babel Software is an exploratory implementation within the localisation space. It takes advantage of a concept called Micro Crowdsourcing.
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Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
