MATLAB Medical Software

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Browse free open source MATLAB Medical Software and projects below. Use the toggles on the left to filter open source MATLAB Medical Software by OS, license, language, programming language, and project status.

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  • 1
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 463 This Week
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  • 2
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 128 This Week
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  • 3

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 59 This Week
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  • 4
    Iso2Mesh - A 3D Mesh Generation Toolbox

    Iso2Mesh - A 3D Mesh Generation Toolbox

    A 3D surface and volumetric mesh generator for MATLAB/Octave

    A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.
    Downloads: 24 This Week
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  • 5
    MRiLab

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961
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    Downloads: 10 This Week
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  • 6
    JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
    Downloads: 26 This Week
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  • 7
    HRVAS: HRV Analysis Software
    This project will be moving to GitHub. If you want to contribute or get the latest source go to: https://github.com/jramshur/HRVAS HRVAS is a heart rate variability (HRV) analysis tool developed using MATLAB. HRVAS can detrend and filter IBI and can perform time domain, frequency domain, time-frequency, Poincare', and nonlinear HRV analysis. If you use this application or modify this application for your research, please reference the thesis entitled "DESIGN, EVALUATION, AND APPLICAION OF HEART RATE VARIABILITY ANALYSIS SOFTWARE (HRVAS)". The thesis can be found here: http://iweb.dl.sourceforge.net/project/hrvas/Documents/ramshur_thesis.pdf
    Downloads: 14 This Week
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  • 8
    sigTOOL
    sigTOOL provides a user-extendable signal analysis environment for processing electrophysiological data within MATLAB. Neuron spike-train, + spectral and time-domain analyses are built in. See http://dx.doi.org/10.1016/j.jneumeth.2008.11.004
    Downloads: 3 This Week
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  • 9
    DoseLab is a set of software programs for quantitative comparison of measured and computed radiation dose distributions. It is written in the Matlab programming language and is easily extensible to more general applications in radiation physics.
    Downloads: 5 This Week
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  • 10
    DDMaker

    DDMaker

    Local Distribution Density Map Maker

    DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from either RGB color, grey level or binary images. DDMaker local density analysis permit to selectively denoise the signal, visualize and quantify its distribution and threshold the image basing on local density.
    Downloads: 4 This Week
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  • 11
    ARIA

    ARIA

    Retinal vessel detection using MATLAB

    NOTE: This project is now hosted at GitHub. Please follow the link below to visit its new home.
    Downloads: 3 This Week
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  • 12
    Evaluation of Cardiac MR Segmentation
    An evaluation framework for assessing contours generated by segmentation algorithms acting on cardiac magnetic resonance (MR) images. These contours are important for clinical assessment of left ventricular volume and mass.
    Downloads: 3 This Week
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  • 13
    KARDIA ("heart" in Greek) is a Matlab software with a graphic user interface designed for the analysis of cardiac interbeat interval data.
    Downloads: 3 This Week
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  • 14
    ReViSP

    ReViSP

    ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids

    Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. Computer Methods and Programs in Biomedicine, 135:51-60, 2016.
    Downloads: 3 This Week
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  • 15
    Dieses Projekt versucht, aus den Oszillationskurven eines an einer schwingenden Plattform befestigten 3D-Beschleunigungssensors charakteristische Kennwerte zu ermitteln, um die posturale Gleichgewichtsleistung von Patienten quantitativ zu beurteilen.
    Downloads: 2 This Week
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  • 16
    SPM surfrend toolbox is a suite of scripts that add surface-based rendering capabilities to SPM99/2 generated statistical maps.
    Downloads: 2 This Week
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  • 17

    AnalyzeNNLS

    MRI Multiple Echo T2 Analysis

    Users load multiecho MRI data and draw ROIs. AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013).
    Downloads: 1 This Week
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  • 18
    A tool to register and superpose CTF MEG SAM(g2) result and MRI image into one gray-level image.
    Downloads: 1 This Week
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  • 19
    FluoroCorrect is a Matlab-based, open source software package designed for correcting image deformations introduced by X-ray image intensifiers in fluoroscopy images. All tools in this package are scriptable, allowing for batch processing.
    Downloads: 1 This Week
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  • 20
    Ledalab
    Matlab software for analysis of skin conductance data (SC; viz., electrodermal activity, EDA; galvanic skin response, GSR). Data decomposition and scientific analysis based on deconvolution approach. Various functions via GUI or batch-mode.
    Downloads: 1 This Week
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  • 21
    PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).
    Downloads: 1 This Week
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  • 22
    SpiNet is a neural simulation tool for large spiking networks with highly heterogeneous synapses. Neurons are modelled as I&F units with dual exponential synaptic conductances. Complex network models can be easily built using the included tool NetBuilder
    Downloads: 1 This Week
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  • 23

    mfBox

    A Matlab toolbox for performing model-free analysis of fMRI data

    The mfBox is a Matlab toolbox for performing model-free analysis of multivariate data sets. It also plugs into SPM used for the analysis of multivariate brain recordings such as fMRI, SPECT and PET data sets. This project is looking for a new maintainer!
    Downloads: 1 This Week
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  • 24
    This project will use 3D Human Emulation using sensors to pickup human movements and displaying them on GUI for analysis.
    Downloads: 0 This Week
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  • 25

    Adaptative thresholding for fMRI

    Matlab scripts to perform cluster FDR adaptative thresholding

    Matlab plug-in for SPM allowing to obtain a threshold for cluster FDR - the method fits a Gamma-Gaussian mixture model to the SPM-T and finds the optimal threshold (crossing between noise and activation). Optionally write the thresholded maps.
    Downloads: 0 This Week
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