Medical Software for Linux

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Browse free open source Medical software and projects for Linux below. Use the toggles on the left to filter open source Medical software by OS, license, language, programming language, and project status.

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  • 1
    OpenEMR
    OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.
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    Downloads: 908 This Week
    Last Update:
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  • 2
    dcm4che is an implementation of DICOM and IHE actors in Java. Homepage: http://www.dcm4che.org, Google Group: http://groups.google.com/group/dcm4che?hl=en, Wiki: http://www.dcm4che.org/confluence, Issue Tracking: http://www.dcm4che.org/jira
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    Downloads: 1,039 This Week
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  • 3
    Brain Workshop

    Brain Workshop

    Python implementation of the Dual N-Back mental exercise

    Brain Workshop is a Python implementation of the Dual N-Back mental exercise. This exercise is the only mental activity that has been scientifically shown to improve your short-term memory (working memory) and fluid intelligence.
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    Downloads: 596 This Week
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  • 4
    Gnaural

    Gnaural

    Entrain your brain!

    A programmable audio generator intended as an aural aid to meditation, implementing the binaural beat principle as described in Gerald Oster's Oct. 1973 Scientific American article "Auditory Beats in the Brain."
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    Downloads: 421 This Week
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  • 5
    OpenMRS

    OpenMRS

    Open source Health IT for the planet

    OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.
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    Downloads: 429 This Week
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  • 6
    Grassroots DICOM

    Grassroots DICOM

    Cross-platform DICOM implementation

    Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
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    Downloads: 250 This Week
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  • 7
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 159 This Week
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  • 8
    Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.
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    Downloads: 166 This Week
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  • 9
    OpenCFU

    OpenCFU

    An application to count bacterial colonies and other circular objects

    OpenCFU is a completely open source lightweight application designed to enumerate clustered circular objects such as bacterial colonies. It can handle digital pictures as well as live stream from a video device/webcam. OpenCFU is cross-platform, fast, reliable and allows the user to implement intuitive filters. Additional information is provided on the website: http://opencfu.sourceforge.net/ OpenCFU is published on PLoS ONE: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0054072
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    Downloads: 133 This Week
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  • 10
    HAPI
    The HAPI HL7v2 project has moved to the following home: https://hapifhir.github.io/hapi-hl7v2/
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    Downloads: 100 This Week
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  • 11
    C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.
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    Downloads: 69 This Week
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  • 12
    ezDICOM is a medical viewer for MRI, CT and ultrasound images. It can read images from Analyze, DICOM, GE Genesis, Interfile, Siemens Magnetom, Siemens Somatom and NEMA formats. It also includes tools for converting medical images from proprietary format
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    Downloads: 91 This Week
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  • 13
    Nifty Reg
    This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
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    Downloads: 48 This Week
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  • 14
    XMedCon

    XMedCon

    medical image conversion utility

    a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects.
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    Downloads: 63 This Week
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  • 15
    Combenefit

    Combenefit

    Synergy analyses of drug and other other agent combinations

    Combenefit software is a standalone application for Windows that performs surface analyses of drug and other agent combinations to identify synergy. Please cite as: "Di Veroli,G.Y. et al. (2016) Combenefit: an interactive platform for the analysis and visualization of drug combinations. Bioinformatics." (http://bioinformatics.oxfordjournals.org/content/early/2016/05/27/bioinformatics.btw230.abstract) Current version (2.021): https://sourceforge.net/projects/combenefit/files/Combenefit%202.02%20WIN_64%20%28PREFERRED%29/ Older version for 32-bit os: https://sourceforge.net/projects/combenefit/files/WIN_32/ Quick user's guide: https://sourceforge.net/projects/combenefit/files/Combenefit_v2.02_quick_guide_v1.03.pdf/download Examples: https://sourceforge.net/projects/combenefit/files/Examples/ Template file: https://sourceforge.net/projects/combenefit/files/REPLICATE_TEMPLATE.xls/download
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    Downloads: 152 This Week
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  • 16

    GNU Health

    GNU Health - The Libre Digital Health ecosystem

    GNU Health is the award-winning Free Hospital and Health Information System (HIS). GNU Health is the Hospital Information System by the United Nations .- International Institute for Global Health. GNU Health was chosen by Richard Stallman to be included in the GNU System, from the Free Software Foundation. GNU Health is brought to you by GNU Solidario, an Non-Profit Organization (NGO) that delivers Health and Education with Free Software.
    Downloads: 25 This Week
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  • 17
    ODIN

    ODIN

    develop, simulate and run magnetic resonance sequences

    ODIN is a free software framework for rapid prototyping of magnetic resonance imaging (MRI) sequences. The sequences can be tested, simulated and executed on scanner hardware from different manufacturers.
    Downloads: 71 This Week
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  • 18
    3DimViewer

    3DimViewer

    3DimViewer is a lightweight 3D viewer of medical DICOM datasets.

    3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn).
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    Downloads: 67 This Week
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  • 19
    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
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    Downloads: 34 This Week
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  • 20

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK.
    Leader badge
    Downloads: 119 This Week
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  • 21
    C# ECG Toolkit

    C# ECG Toolkit

    ECG Toolkit support for: SCP-ECG, DICOM, HL7 aECG, ISHNE & MUSE-XML

    C# ECG Toolkit is an open source software toolkit to convert, view and print electrocardiograms. The toolkit is developed using C# .NET Framework 2.0 and later (code also supports netstandard2.0). Support for ECG formats: SCP-ECG, DICOM, HL7 aECG, ISHNE, MUSE-XML and OmronECG.
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    Downloads: 35 This Week
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  • 22
    Vital Sign Simulator

    Vital Sign Simulator

    Patient vital sign simulator for medical emergency training purposes

    The vital sign simulator simulates a patient monitor and is intended for use in medical emergency training simulations. In combination with a (cheap) cpr-manikin, it offers a low-cost alternative to commercial high-tech patient simulation manikins. It is used with a dual monitor system, one monitor with controls for the operator and one providing the vital signs to the trainees. Heart rate, oxygen saturation, etCO2, respiratory rate, blood pressure and various moving ecg-samples can be set and changed at any time by the operator. The trainee-side interface allows automatic/manual defibrillation, cardioversion and pacing.
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    Downloads: 37 This Week
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  • 23
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 95 This Week
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  • 24
    simECG is an ECG signal simulator aimed for basic training and experimenting. As a full software ECG signal generator, it's ideal for training and demonstration purposes. You can create customizable signals usually present in many pathologies.
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    Downloads: 27 This Week
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  • 25
    Iso2Mesh - A 3D Mesh Generation Toolbox

    Iso2Mesh - A 3D Mesh Generation Toolbox

    A 3D surface and volumetric mesh generator for MATLAB/Octave

    A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows.
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    Downloads: 38 This Week
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