Open Source Medical Physics Software
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Medical Physics Software
Browse free open source Medical Physics software and projects for Windows and ChromeOS below. Use the toggles on the left to filter open source Medical Physics software by OS, license, language, programming language, and project status.
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Iso2Mesh - A 3D Mesh Generation Toolbox
A 3D surface and volumetric mesh generator for MATLAB/Octave
A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows. -
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gVirtualXRay
Virtual X-Ray Imaging Library on GPU
gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave. -
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PhysiCell
physics-based multicellular simulator
PhysiCell is a cross-platform C++ framework for large, physics-based multicellular simulations. -
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IQM
Scientific Image and Signal Analysis in Java
IQM has moved to GitHub -
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Fekke's BMI calculator
C# BMI Calculator with wizzard.
An application written in C#, which will assist you in calculating your Body Mass Index. -
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Orthanc
Lightweight, RESTful DICOM server for healthcare and medical research
[2015-06-12] Orthanc has left SourceForge. All the downloads are now available directly from our official Website: http://www.orthanc-server.com/browse.php -
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vision2
Binocular vision examination using shutter glasses
Vision2 serves as tool for ophthalmologists and other vision testing professionals. It's useful for a variety of ophthalmology testing applications related to stereo vision. It implements many of classical tests but also new types of vectographic and random dot exams. Program was created as part of diploma thesis in Wroclaw University of Technology in Poland. -
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Activity Prediction Software
To envision the radiation exposure in Neutron Activation Experiments
A software called Activity Predictor is developed using Java TM programming language. The Activity Predictor calculates activities, exposure rates and gamma spectra of activated samples for NAA experiments. The calculation procedure for predictions involve both analytical and Monte Carlo methods. The Activity Predictor software is validated by a series of activation experiments. It has been found that this software calculates the activities and exposure rates precisely. The software also predicts gamma spectrum for each measurement. The predicted spectra agreed partially with measured spectra. This software has a XML database which includes nuclear data for frequently used materials in NAA. Neutron Neutron cross section data from ‘‘ Tables for Neutron Activation Analysis’’ , photon cross section data from Berger and Hubbell’s XCOM photon cross sections database [ 2], and isotope decay from from Lund/LBNL database are included in this database. -
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AnalyzeNNLS
MRI Multiple Echo T2 Analysis
Users load multiecho MRI data and draw ROIs. AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013). -
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A cross-platform Java program to turn a simple Geiger counter into the equivalent of a state-of-the art digital model, plus some – using your laptop computer.
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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KYM is a MATLAB / GNU Octave set of functions that implements a wavelet-based automated procedure of quantification and characterization of biological signals. In particular it has been thought for the analysis of the oscillatory component of cytosolic calcium concentration time course.
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This library aims to provide support for D-dimensional images in Java and to enable high-level implementation of algorithms in dimensionally-invariant manner. Major features: the dimensionality and the access to primitive data types are abstracted.
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NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.
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coizfm
COI ZFM tools
Tools for Medical Physics Department -
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cphcttoolbox
Cph CT Toolbox is a selection of Computed Tomography tools
Copenhagen Computed Tomography Toolbox is a collection of applications and libraries for flexible and efficient CT reconstruction. The toolbox apps generally take a set of projections (X-ray intensity measurements) and filter and back project them in order to recreate the image or volume that the projections represent. The project includes both mostly informative CPU implementations and highly efficient GPU implementations. Regular releases are hosted at the Python Package Index. -
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The openLBMflow is an fast fluid flow solver based on Lattice Boltzmann Method. Main future are 2D and 3D code, single and multiphase models, Output data in VTK format can be directly open in Paraview. Download Windows or Linux binary version now.
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toothache
A conversion utility from proprietary TIF exams to DICOM standard
This application is able to convert TIF radiology exams to DICOM objects
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